Non-Coding RNA Search

Ss1.1-rret37_p2.5

Sequence:


               
               TTTTTAAGGGAGCAAGAAAGACCTTAAACTATTCATTCCACTGAATGAATATGTTAAGGA
CCAGGTTAGATTATTTTCTAAGTTGAAAACTTCATGTGCCTAGGAAAAGGTGGAAAGTTG
CTTGCTCTGAGCAGTGCTCACTCAGATTGTGGGATCACATCTGCAACTTTTAGAAACAGT
GCTTTATTGCAGCAGTCTTTTCTATTTGACTTTTTCGTTTTTTAAATGGCATTAAAATTT
CAGAAGATCAGGTTCACTCTGAAACCTTAAGGGTACCAGATATTTTCTATACTGCAGGAT
TTCTGATGATGTTGAAAGACATGTTTAAATAGCTTTAGTAAATTCTCTTTCTAGTGCTTA
AAAAAATTTTCCACTTCAAAAGTAAGTCATTTCATTATATGTAGTTTGAGGCCAAATATT
TATGTTCAGTTGAATATTAAATACCTATCATTCAAAAGCAAACAAAACTAAATATTATTG
AAAAAGTTTTAAACATCAAGATTGATTTCTCCCTAAAACCACTTATTTATAAGTAAATTG
TGTTTCTTGGCACTTTTGGCCAAATATTCAGATTTAATAAAATTCTTTTCCAGTCCTAGT
ACATCAGGCTAACACAGTTAAGCACTTAAGAATCTTGTTTCATTTTATTTCTTATTTCAA
AATACATTTAACTGTTTAGATTCTAAACTTTGCAGTTTCAGTTATAAACTTCAGAGATTT
TTGAGCCTCGTTTTCTTCAATACTTGAAATAGAGGAAGCTCGAACACTTCATCATGTTTA
ACCTGATAAACCTGCTGTAAGAGCCATACTTTTGAGGCGTTTTCTAAGTGAACCATGGGG
ATCCAGGATTTAGAATTTCTTGATCTAAACTTCGTGCTGCATAAAGAAAATAATCAGAAA
TACACATTTCATAGTATAAAATAATGAAACACTTATTTTTACACTTTATTATCTAACGAT
ATATGCACCTTTCAGAAATTCAATGTGTGTTCAAGTAAAGCATGTTAGAATAATTATGAG
TTGGCAAGTTTTTTTTTTTTTTTTCTAGAATTAAGAGTATTTGTGTGGGGTTTTGTTTGT
TTACAAATAATCAGACTAATATTTAAACATACAAAATAATTGACAGTAATTTTGCACTTG
TTTACGAAAGATACACTTCTCAGTTTTTCCGTGGGTGCACACGTAGACACATACACACAA
ACTACTGCATTGAGAATCCTGGAGCTGTGTTGTGGACCATAGACCAAGCTGCTGAAGCTG
TTATTTTTGGTCAGGAAGAATGTTAACCTGTCATGAAGGTATAAAATAATTTAGAAGTGA
ATGTTTTTCTATCCCATCCATGTGCAATTATACTCTTAAATCCTACTACACTACATGAAA
GTGGACATTCCAGAATATAGATGTGATTATATAATCTTAATTATTATTAAACTGATGATT
GTTGAAAATCAGTGACGCATTTGTTATAGAGTATAACTCATCGTTTACAGTATGCTTAGG
TGGCATCATAAATAGAAGGTGAATAAAGTATTCCCAATAAATTTATATAGTGGTGAGGAA
TTACTTGCCTTCTGTGGACATTTTATAAGTGCATTTTATATTGCAATAAAATTTTTTCTC
TTTAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTAAGGGAGCAAGAAAGACCTTAAACTATTCATTCCACTGAATGAATATGTTAAGGA
CCAGGTTAGATTATTTTCTAAGTTGAAAACTTCATGTGCCTAGGAAAAGGTGGAAAGTTG
CTTGCTCTGAGCAGTGCTCACTCAGATTGTGGGATCACATCTGCAACTTTTAGAAACAGT
GCTTTATTGCAGCAGTCTTTTCTATTTGACTTTTTCGTTTTTTAAATGGCATTAAAATTT
CAGAAGATCAGGTTCACTCTGAAACCTTAAGGGTACCAGATATTTTCTATACTGCAGGAT
TTCTGATGATGTTGAAAGACATGTTTAAATAGCTTTAGTAAATTCTCTTTCTAGTGCTTA
AAAAAATTTTCCACTTCAAAAGTAAGTCATTTCATTATATGTAGTTTGAGGCCAAATATT
TATGTTCAGTTGAATATTAAATACCTATCATTCAAAAGCAAACAAAACTAAATATTATTG
AAAAAGTTTTAAACATCAAGATTGATTTCTCCCTAAAACCACTTATTTATAAGTAAATTG
TGTTTCTTGGCACTTTTGGCCAAATATTCAGATTTAATAAAATTCTTTTCCAGTCCTAGT
ACATCAGGCTAACACAGTTAAGCACTTAAGAATCTTGTTTCATTTTATTTCTTATTTCAA
AATACATTTAACTGTTTAGATTCTAAACTTTGCAGTTTCAGTTATAAACTTCAGAGATTT
TTGAGCCTCGTTTTCTTCAATACTTGAAATAGAGGAAGCTCGAACACTTCATCATGTTTA
ACCTGATAAACCTGCTGTAAGAGCCATACTTTTGAGGCGTTTTCTAAGTGAACCATGGGG
ATCCAGGATTTAGAATTTCTTGATCTAAACTTCGTGCTGCATAAAGAAAATAATCAGAAA
TACACATTTCATAGTATAAAATAATGAAACACTTATTTTTACACTTTATTATCTAACGAT
ATATGCACCTTTCAGAAATTCAATGTGTGTTCAAGTAAAGCATGTTAGAATAATTATGAG
TTGGCAAGTTTTTTTTTTTTTTTTCTAGAATTAAGAGTATTTGTGTGGGGTTTTGTTTGT
TTACAAATAATCAGACTAATATTTAAACATACAAAATAATTGACAGTAATTTTGCACTTG
TTTACGAAAGATACACTTCTCAGTTTTTCCGTGGGTGCACACGTAGACACATACACACAA
ACTACTGCATTGAGAATCCTGGAGCTGTGTTGTGGACCATAGACCAAGCTGCTGAAGCTG
TTATTTTTGGTCAGGAAGAATGTTAACCTGTCATGAAGGTATAAAATAATTTAGAAGTGA
ATGTTTTTCTATCCCATCCATGTGCAATTATACTCTTAAATCCTACTACACTACATGAAA
GTGGACATTCCAGAATATAGATGTGATTATATAATCTTAATTATTATTAAACTGATGATT
GTTGAAAATCAGTGACGCATTTGTTATAGAGTATAACTCATCGTTTACAGTATGCTTAGG
TGGCATCATAAATAGAAGGTGAATAAAGTATTCCCAATAAATTTATATAGTGGTGAGGAA
TTACTTGCCTTCTGTGGACATTTTATAAGTGCATTTTATATTGCAATAAAATTTTTTCTC
TTTAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-117, + strand, RNAz p=0.983513

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-117, + strand, RNAz p=0.983513

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               15-110, DB247113 UMVEN2 Homo sapiens cDNA clone UMVEN2000541 5', mRNA 
(dbj|DB247113.1|), blast E-value=3e-17, identity=87.5% 
               

               
               19-117, 601684 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CB426495.1|), 
blast E-value=2e-33, identity=93.94% 
               

               
               15-109, CL__05_R_T3___B03_T_035 Bos taurus CF-24-HW liver cDNA library Bos 
(gb|DV788766.1|), blast E-value=6e-25, identity=91.67% 
               

               
               15-117, 001022BUTA003252HT BUTA Bos taurus cDNA, mRNA sequence (gb|DY125141.1|), 
blast E-value=1e-35, identity=94.17% 
               

               
               19-117, 000517BSIA002041HT BSIA Bos taurus cDNA, mRNA sequence (gb|DY139386.1|), 
blast E-value=2e-33, identity=93.94% 
               

               
               15-117, 000829BEMN008559HT BEMN Bos taurus cDNA, mRNA sequence (gb|DY154466.1|), 
blast E-value=1e-35, identity=94.17%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               15-110, DB247113 UMVEN2 Homo sapiens cDNA clone UMVEN2000541 5', mRNA 
(dbj|DB247113.1|), blast E-value=3e-17, identity=87.5% 
               

               
               19-117, 601684 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CB426495.1|), 
blast E-value=2e-33, identity=93.94% 
               

               
               15-109, CL__05_R_T3___B03_T_035 Bos taurus CF-24-HW liver cDNA library Bos 
(gb|DV788766.1|), blast E-value=6e-25, identity=91.67% 
               

               
               15-117, 001022BUTA003252HT BUTA Bos taurus cDNA, mRNA sequence (gb|DY125141.1|), 
blast E-value=1e-35, identity=94.17% 
               

               
               19-117, 000517BSIA002041HT BSIA Bos taurus cDNA, mRNA sequence (gb|DY139386.1|), 
blast E-value=2e-33, identity=93.94% 
               

               
               15-117, 000829BEMN008559HT BEMN Bos taurus cDNA, mRNA sequence (gb|DY154466.1|), 
blast E-value=1e-35, identity=94.17%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC022344, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC022344, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-1026, gnl|bosTau2|chr5 (23486769-23485766)
               

               
               1-1026, gnl|Hg17|chr12 (42475319-42474373)
               

               
               1-1026, gnl|Mm7|chr15 (94583310-94582351)
               


               
               1061-1626, gnl|bosTau2|chr5 (23485193-23484646)
               

               
               1061-1626, gnl|Hg17|chr12 (42474349-42473792)
               

               
               1061-1626, gnl|Mm7|chr15 (94582324-94581792)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1026, gnl|bosTau2|chr5 (23486769-23485766)
               

               
               1-1026, gnl|Hg17|chr12 (42475319-42474373)
               

               
               1-1026, gnl|Mm7|chr15 (94583310-94582351)
               


               
               1061-1626, gnl|bosTau2|chr5 (23485193-23484646)
               

               
               1061-1626, gnl|Hg17|chr12 (42474349-42473792)
               

               
               1061-1626, gnl|Mm7|chr15 (94582324-94581792)

Expressed library(ies): 28 entry(ies)

More info

Expressed library(ies): 28 entry(ies)

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               ret (0.7724)
               

               
               lyg (0.665513)
               

               
               tra (0.492368)
               

               
               mgp (0.461361)
               

               
               liv (0.438853)
               

               
               lin (0.436808)
               

               
               aor (0.390549)
               

               
               kid (0.389206)
               

               
               mgm (0.360685)
               

               
               fbs (0.350693)
               

               
               cbl (0.344392)
               

               
               fat (0.294855)
               

               
               cbe (0.239234)
               

               
               cty (0.20816)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               cag (0.151194)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

Expressed library(ies): 28 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.7724)
               

               
               lyg (0.665513)
               

               
               tra (0.492368)
               

               
               mgp (0.461361)
               

               
               liv (0.438853)
               

               
               lin (0.436808)
               

               
               aor (0.390549)
               

               
               kid (0.389206)
               

               
               mgm (0.360685)
               

               
               fbs (0.350693)
               

               
               cbl (0.344392)
               

               
               fat (0.294855)
               

               
               cbe (0.239234)
               

               
               cty (0.20816)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               cag (0.151194)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

	15-110, DB247113 UMVEN2 Homo sapiens cDNA clone UMVEN2000541 5', mRNA (dbj\|DB247113.1\|), blast E-value=3e-17, identity=87.5%
	19-117, 601684 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb\|CB426495.1\|), blast E-value=2e-33, identity=93.94%
	15-109, CL__05_R_T3___B03_T_035 Bos taurus CF-24-HW liver cDNA library Bos (gb\|DV788766.1\|), blast E-value=6e-25, identity=91.67%
	15-117, 001022BUTA003252HT BUTA Bos taurus cDNA, mRNA sequence (gb\|DY125141.1\|), blast E-value=1e-35, identity=94.17%
	19-117, 000517BSIA002041HT BSIA Bos taurus cDNA, mRNA sequence (gb\|DY139386.1\|), blast E-value=2e-33, identity=93.94%
	15-117, 000829BEMN008559HT BEMN Bos taurus cDNA, mRNA sequence (gb\|DY154466.1\|), blast E-value=1e-35, identity=94.17%

	1-1026, gnl\|bosTau2\|chr5 (23486769-23485766)
	1-1026, gnl\|Hg17\|chr12 (42475319-42474373)
	1-1026, gnl\|Mm7\|chr15 (94583310-94582351)

	1061-1626, gnl\|bosTau2\|chr5 (23485193-23484646)
	1061-1626, gnl\|Hg17\|chr12 (42474349-42473792)
	1061-1626, gnl\|Mm7\|chr15 (94582324-94581792)

	ret (0.7724)
	lyg (0.665513)
	tra (0.492368)
	mgp (0.461361)
	liv (0.438853)
	lin (0.436808)
	aor (0.390549)
	kid (0.389206)
	mgm (0.360685)
	fbs (0.350693)
	cbl (0.344392)
	fat (0.294855)
	cbe (0.239234)
	cty (0.20816)
	sag (0.182715)
	gul (0.177588)
	sin (0.174948)
	rec (0.17307)
	mga (0.160205)
	fco (0.157208)
	cag (0.151194)
	ski (0.146735)
	pty (0.142714)
	nca (0.136874)
	ova (0.129132)
	sug (0.127291)
	bla (0.124347)
	spc (0.113366)