Ss1.1-rret38_a13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACCAAGCACTACGAGATGCTTGCTAACCGAACAGCTGCAAATGGTCACTGCATTGATAT TTATGCTTGTGCCCTTGATCAGACTGGACTTTTGGAGATGAAGTGTTGCACAAATCTTAC TGGAGGCCACATGGTAATGGGAGATTCTTTCAACACTTCTCTCTTCAAGCAGACATTCCA AAGAATTTTCAGTAAAGATTTTAATGGCAATTTCCGAATGGCATTTGGCGCCACTTTGGA AGTAAAGACCTCTCGGGAACTGAAGATCGCAGGAGCCATCGGACCTTGTGTGTCTCTGAA CATGAGAGGACCATGTGTATCAGAAAATGAGCTTGGCGTTGGTGGCACGAGTCAGTGGAA GATCTGTGGCCTGGATCCCACATCTACACTTGGCATCTACTTTGAAGTGGTCAATCAGCA CAACGCCCCAGTCCCGCAGGGAGGGAGAGGCGCCATCCAGTTTGTCACACACTATCAACA CTCCAGCACCCAGAGGCGCATCCGCGTGACCACCATCGCCCGAAATTGGGCAGATGCGCA GAGCCAGCTCAAGCACATAGAGGCTGCATTTGACCAGGAGGCCGCGGCAGTCCTGATGGC ACGGCTGGGAGTGTTCCGCACAGAGTCGGAGGAGGGCCCAGATGTGCTCCGGTGGCTGGA CCGACAGCTCATCCGACTGTGTCAGAAGTTTGGACAGTATAACAAAGAAGACCCCACTTC TTTTAGGTTATCAGATTCCTTCTCCCTGTACCCTCAGTTCATGTTCCATCTTAGAAGATC TCCGTTTCTTCAAGTGTTTAACAACAGTCCTGATGAATCATCGTATTATCGACACCACTT TGCCCGACAGGATCTAACCCAGTCCCTCATCATGATCCAGCCCATTCTCTACTCCTATTC ATTCCATGGGCCTCCGGAGCCCGTGCTCCTGGACAGCAGCAGCATTCTGGCTGATAGGAT CCTCCTGATGGATACGTTCTTCCAAATTGTCATTTATCTCGGTGAGACAATAGCCCAGTG GCGGAAAGCTGGGTACCAGGACATGCCCGAATATGAAAACTTCAAGCATCTTCTTCAGGC CCCGCTGGACGATGCTCAGGAAATCTTGCAGGCGCGCTTCCCAATGCCGCGTTACATCAA CACGGAGCATGGAGGCAGTCAGGCTCGATTCCTTTTGTCTAAAGTGAATCCATCTCAGAC ACACAATAACCTGTATGCTTGGGGACAGGAGACGGGAGCACCCATCCTTACAGATGACGT TAGCCTGCAGGTGTTCATGGACCATCTGAAGAAACTGGCTGTCTCCAGTGCCTGTTAAAC TGAGGATATGAGGAGGAAGGGGAAGAAAACACTGTCATATTGTGTCCACAGCTGTTTATA AAGGCTTAACATTCCTTTTACTTTTCTGGTGGAATTTAATAAATAATCAAAGCAAGTATT ATGTAACTCTTTAGGTTATAATTTATTTGTATTCCTTTATCTGTGCCCTTGTTCTTACAC TGTAAAATTATAAGGTCATAAATGTTTTGGTACTTGTAGATGTTTATATGTTTTTTGTAT CCTAACTTTTAGAGTCTGTATAAAATCAGAGCTAATGTATTTTGGCAGCTTGCTTACCTG AAAATTAAAGTGATCAGAAAGGAAATAAACCTGGAAGAAGAAAGCACAGGTTAAAATAAT GCTAATACAAATTTGATTTCTGAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACCAAGCACTACGAGATGCTTGCTAACCGAACAGCTGCAAATGGTCACTGCATTGATAT TTATGCTTGTGCCCTTGATCAGACTGGACTTTTGGAGATGAAGTGTTGCACAAATCTTAC TGGAGGCCACATGGTAATGGGAGATTCTTTCAACACTTCTCTCTTCAAGCAGACATTCCA AAGAATTTTCAGTAAAGATTTTAATGGCAATTTCCGAATGGCATTTGGCGCCACTTTGGA AGTAAAGACCTCTCGGGAACTGAAGATCGCAGGAGCCATCGGACCTTGTGTGTCTCTGAA CATGAGAGGACCATGTGTATCAGAAAATGAGCTTGGCGTTGGTGGCACGAGTCAGTGGAA GATCTGTGGCCTGGATCCCACATCTACACTTGGCATCTACTTTGAAGTGGTCAATCAGCA CAACGCCCCAGTCCCGCAGGGAGGGAGAGGCGCCATCCAGTTTGTCACACACTATCAACA CTCCAGCACCCAGAGGCGCATCCGCGTGACCACCATCGCCCGAAATTGGGCAGATGCGCA GAGCCAGCTCAAGCACATAGAGGCTGCATTTGACCAGGAGGCCGCGGCAGTCCTGATGGC ACGGCTGGGAGTGTTCCGCACAGAGTCGGAGGAGGGCCCAGATGTGCTCCGGTGGCTGGA CCGACAGCTCATCCGACTGTGTCAGAAGTTTGGACAGTATAACAAAGAAGACCCCACTTC TTTTAGGTTATCAGATTCCTTCTCCCTGTACCCTCAGTTCATGTTCCATCTTAGAAGATC TCCGTTTCTTCAAGTGTTTAACAACAGTCCTGATGAATCATCGTATTATCGACACCACTT TGCCCGACAGGATCTAACCCAGTCCCTCATCATGATCCAGCCCATTCTCTACTCCTATTC ATTCCATGGGCCTCCGGAGCCCGTGCTCCTGGACAGCAGCAGCATTCTGGCTGATAGGAT CCTCCTGATGGATACGTTCTTCCAAATTGTCATTTATCTCGGTGAGACAATAGCCCAGTG GCGGAAAGCTGGGTACCAGGACATGCCCGAATATGAAAACTTCAAGCATCTTCTTCAGGC CCCGCTGGACGATGCTCAGGAAATCTTGCAGGCGCGCTTCCCAATGCCGCGTTACATCAA CACGGAGCATGGAGGCAGTCAGGCTCGATTCCTTTTGTCTAAAGTGAATCCATCTCAGAC ACACAATAACCTGTATGCTTGGGGACAGGAGACGGGAGCACCCATCCTTACAGATGACGT TAGCCTGCAGGTGTTCATGGACCATCTGAAGAAACTGGCTGTCTCCAGTGCCTGTTAAAC TGAGGATATGAGGAGGAAGGGGAAGAAAACACTGTCATATTGTGTCCACAGCTGTTTATA AAGGCTTAACATTCCTTTTACTTTTCTGGTGGAATTTAATAAATAATCAAAGCAAGTATT ATGTAACTCTTTAGGTTATAATTTATTTGTATTCCTTTATCTGTGCCCTTGTTCTTACAC TGTAAAATTATAAGGTCATAAATGTTTTGGTACTTGTAGATGTTTATATGTTTTTTGTAT CCTAACTTTTAGAGTCTGTATAAAATCAGAGCTAATGTATTTTGGCAGCTTGCTTACCTG AAAATTAAAGTGATCAGAAAGGAAATAAACCTGGAAGAAGAAAGCACAGGTTAAAATAAT GCTAATACAAATTTGATTTCTGAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1017-1136, - strand, RNAz p=0.51121 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1017-1136, - strand, RNAz p=0.51121 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 115-247, gnl|bosTau2|chr13 (24273113-24273245) | |
| 115-247, gnl|Hg17|chr20 (18459315-18459447) | |
| 115-247, gnl|Mm7|chr2 (144313329-144313459) | |
| 526-679, gnl|bosTau2|chr13 (24280598-24280751) | |
| 526-679, gnl|canFam2|chr24 (7676943-7676781) | |
| 526-679, gnl|danRer3|chr6 (1645767-1645925) | |
| 526-679, gnl|dasNov1|scaffold_68676 (6877-6715) | |
| 526-679, gnl|echTel1|scaffold_303103 (9609-9769) | |
| 526-679, gnl|fr1|chrUn (93274551-93274712) | |
| 526-679, gnl|galGal2|chr14 (16868873-16869035) | |
| 526-679, gnl|hg17|chr20 (18471661-18471823) | |
| 526-679, gnl|Hg17|chr20 (18471663-18471816) | |
| 526-679, gnl|loxAfr1|scaffold_32414 (29430-29264) | |
| 526-679, gnl|mm7|chr2 (144322799-144322961) | |
| 526-679, gnl|Mm7|chr2 (144322801-144322954) | |
| 526-679, gnl|monDom2|scaffold_1 (53241448-53241610) | |
| 526-679, gnl|oryCun1|scaffold_131059 (4839-4677) | |
| 526-679, gnl|panTro1|chr21_random (2229631-2229469) | |
| 526-679, gnl|rheMac2|chr10 (51871888-51872050) | |
| 526-679, gnl|rn3|chr3 (133034744-133034906) | |
| 526-679, gnl|tetNig1|chr18 (4769767-4769613) | |
| 526-679, gnl|xenTro1|scaffold_582 (340348-340187) | |
| 740-919, gnl|bosTau2|chr13 (24284292-24284471) | |
| 740-919, gnl|Hg17|chr20 (18477233-18477414) | |
| 740-919, gnl|Mm7|chr2 (144326437-144326616) | |
| 983-1163, gnl|bosTau2|chr13 (24286630-24286814) | |
| 983-1163, gnl|Hg17|chr20 (18482851-18483035) | |
| 983-1163, gnl|Mm7|chr2 (144327696-144327879) | |
| 1226-1703, gnl|bosTau2|chr13 (24291553-24292025) | |
| 1226-1703, gnl|Hg17|chr20 (18489292-18489766) | |
| 1226-1703, gnl|Mm7|chr2 (144331140-144331621) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 115-247, gnl|bosTau2|chr13 (24273113-24273245) | |
| 115-247, gnl|Hg17|chr20 (18459315-18459447) | |
| 115-247, gnl|Mm7|chr2 (144313329-144313459) | |
| 526-679, gnl|bosTau2|chr13 (24280598-24280751) | |
| 526-679, gnl|canFam2|chr24 (7676943-7676781) | |
| 526-679, gnl|danRer3|chr6 (1645767-1645925) | |
| 526-679, gnl|dasNov1|scaffold_68676 (6877-6715) | |
| 526-679, gnl|echTel1|scaffold_303103 (9609-9769) | |
| 526-679, gnl|fr1|chrUn (93274551-93274712) | |
| 526-679, gnl|galGal2|chr14 (16868873-16869035) | |
| 526-679, gnl|hg17|chr20 (18471661-18471823) | |
| 526-679, gnl|Hg17|chr20 (18471663-18471816) | |
| 526-679, gnl|loxAfr1|scaffold_32414 (29430-29264) | |
| 526-679, gnl|mm7|chr2 (144322799-144322961) | |
| 526-679, gnl|Mm7|chr2 (144322801-144322954) | |
| 526-679, gnl|monDom2|scaffold_1 (53241448-53241610) | |
| 526-679, gnl|oryCun1|scaffold_131059 (4839-4677) | |
| 526-679, gnl|panTro1|chr21_random (2229631-2229469) | |
| 526-679, gnl|rheMac2|chr10 (51871888-51872050) | |
| 526-679, gnl|rn3|chr3 (133034744-133034906) | |
| 526-679, gnl|tetNig1|chr18 (4769767-4769613) | |
| 526-679, gnl|xenTro1|scaffold_582 (340348-340187) | |
| 740-919, gnl|bosTau2|chr13 (24284292-24284471) | |
| 740-919, gnl|Hg17|chr20 (18477233-18477414) | |
| 740-919, gnl|Mm7|chr2 (144326437-144326616) | |
| 983-1163, gnl|bosTau2|chr13 (24286630-24286814) | |
| 983-1163, gnl|Hg17|chr20 (18482851-18483035) | |
| 983-1163, gnl|Mm7|chr2 (144327696-144327879) | |
| 1226-1703, gnl|bosTau2|chr13 (24291553-24292025) | |
| 1226-1703, gnl|Hg17|chr20 (18489292-18489766) | |
| 1226-1703, gnl|Mm7|chr2 (144331140-144331621) |
| Expressed library(ies): 30 entry(ies) | More info |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
| mgp (0.461361) | |
| lin (0.436808) | |
| aor (0.390549) | |
| ret (0.3862) | |
| sag (0.36543) | |
| mgm (0.360685) | |
| sto (0.359648) | |
| mga (0.32041) | |
| cag (0.302389) | |
| cte (0.29274) | |
| pty (0.285429) | |
| csk (0.281492) | |
| fce (0.271592) | |
| lyg (0.266205) | |
| sug (0.254582) | |
| pgl (0.236967) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| rec (0.17307) | |
| fco (0.157208) | |
| liv (0.146284) | |
| spl (0.143184) | |
| kid (0.129735) | |
| thg (0.126791) | |
| bla (0.124347) | |
| tra (0.123092) | |
| eep (0.122564) | |
| cbl (0.114797) | |
| spc (0.113366) | |
| cty (0.10408) |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mgp (0.461361) | |
| lin (0.436808) | |
| aor (0.390549) | |
| ret (0.3862) | |
| sag (0.36543) | |
| mgm (0.360685) | |
| sto (0.359648) | |
| mga (0.32041) | |
| cag (0.302389) | |
| cte (0.29274) | |
| pty (0.285429) | |
| csk (0.281492) | |
| fce (0.271592) | |
| lyg (0.266205) | |
| sug (0.254582) | |
| pgl (0.236967) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| rec (0.17307) | |
| fco (0.157208) | |
| liv (0.146284) | |
| spl (0.143184) | |
| kid (0.129735) | |
| thg (0.126791) | |
| bla (0.124347) | |
| tra (0.123092) | |
| eep (0.122564) | |
| cbl (0.114797) | |
| spc (0.113366) | |
| cty (0.10408) |