Non-Coding RNA Search

Ss1.1-rret38_b6.5

Sequence:


               
               AGAAAAATCTATATGTAGTATTGATAAGATGTAGGATTGTTATATACCATTATTTGAGTC
ATCCTTAAACACTTGAATTATATTGTATGATAGCATACTTGGTAAGAGAAGATTCCACAA
AAATAGGGATGGTACACCATATGCAAGTTCCCATTCCTATTCTGATTGATACAGTACATT
GACAATTCATGCCAATGGTGCTAATTCAATAGGCTGAATGGCTGGTGTTATCAGGTTTAT
CAAATAAAAGCATTCAGTAAAGTAATGGTTCTCCTTTCTTCAGGTGCATTTTCATACTCT
TTCAAATGGAGAATGGATTTTCTTTAATGAAAGAAAAATCATTTTTCTAGAGCTCTGCAT
TCAATTCTGTAGCATACTTGGAGAAACTGCATTTAAAAGGCAGCCAAAAAGTATTCATTT
TTATCAAAATTTCAAAATTATAGCCTGCCTTTGCAACACTGCAGTTTTTATGATAAAATC
ATGGCAATGACTGATTCTATCAATATTGTATAAAAAGACTTTGAAACAATTGCATTTATA
TAATATGTAAACAATATTGTTTTGTAAATAAATGTCTCCTTTTTTATTTACTTTGGTATA
TTTTTATGTAAGGATATTTCAAATTAAGTATTAAGGCACAAATACATGTCATGTGACAGA
AAAGCAAATGCTTATATTTCGGAGCAAATTAGCTGATTAAATAGTGGTCTTAAAACTCCA
TATGCTAATGGTTAGATGGTTATATTACAATCATTTTATATTTTTTTACATTATTAACAT
TCACTATGGATTCATGATGGCTGTATAATGTGAATGTGAAATTTCAATGGTTTACTGTCA
ATGTATTCAAATCTCAACGTTCCATTATTTTAATAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAAAATCTATATGTAGTATTGATAAGATGTAGGATTGTTATATACCATTATTTGAGTC
ATCCTTAAACACTTGAATTATATTGTATGATAGCATACTTGGTAAGAGAAGATTCCACAA
AAATAGGGATGGTACACCATATGCAAGTTCCCATTCCTATTCTGATTGATACAGTACATT
GACAATTCATGCCAATGGTGCTAATTCAATAGGCTGAATGGCTGGTGTTATCAGGTTTAT
CAAATAAAAGCATTCAGTAAAGTAATGGTTCTCCTTTCTTCAGGTGCATTTTCATACTCT
TTCAAATGGAGAATGGATTTTCTTTAATGAAAGAAAAATCATTTTTCTAGAGCTCTGCAT
TCAATTCTGTAGCATACTTGGAGAAACTGCATTTAAAAGGCAGCCAAAAAGTATTCATTT
TTATCAAAATTTCAAAATTATAGCCTGCCTTTGCAACACTGCAGTTTTTATGATAAAATC
ATGGCAATGACTGATTCTATCAATATTGTATAAAAAGACTTTGAAACAATTGCATTTATA
TAATATGTAAACAATATTGTTTTGTAAATAAATGTCTCCTTTTTTATTTACTTTGGTATA
TTTTTATGTAAGGATATTTCAAATTAAGTATTAAGGCACAAATACATGTCATGTGACAGA
AAAGCAAATGCTTATATTTCGGAGCAAATTAGCTGATTAAATAGTGGTCTTAAAACTCCA
TATGCTAATGGTTAGATGGTTATATTACAATCATTTTATATTTTTTTACATTATTAACAT
TCACTATGGATTCATGATGGCTGTATAATGTGAATGTGAAATTTCAATGGTTTACTGTCA
ATGTATTCAAATCTCAACGTTCCATTATTTTAATAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               276-368, + strand, RNAz p=0.992899

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               276-368, + strand, RNAz p=0.992899

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_005259, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_005259, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-368, gnl|bosTau2|chr2 (3995777-3996147)
               

               
               1-368, gnl|Hg17|chr2 (190747123-190746291)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-368, gnl|bosTau2|chr2 (3995777-3996147)
               

               
               1-368, gnl|Hg17|chr2 (190747123-190746291)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               mgp (1.38408)
               

               
               bfe (0.749288)
               

               
               mgm (0.180343)
               

               
               mcp (0.170648)
               

               
               ret (0.128733)
               

               
               ese (0.126502)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (1.38408)
               

               
               bfe (0.749288)
               

               
               mgm (0.180343)
               

               
               mcp (0.170648)
               

               
               ret (0.128733)
               

               
               ese (0.126502)

	1-368, gnl\|bosTau2\|chr2 (3995777-3996147)
	1-368, gnl\|Hg17\|chr2 (190747123-190746291)

	mgp (1.38408)
	bfe (0.749288)
	mgm (0.180343)
	mcp (0.170648)
	ret (0.128733)
	ese (0.126502)