Ss1.1-rret38_p24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACCGAGGATGTGGACACTCCTCCCAGAAAGAAGAAGAGGAAACACCGGTTGTGGGCTGC ACACTGCAGAAAGATACAACTGAAAAAGGATGGCTCCTCCAACCACGTTTACAACTATCA GCCCTGCGACCACCCACGGCAGCCTTGCGACAGTTCGTGCCCTTGTGTGATTGCACAAAA TTTTTGTGAAAAGTTTTGTCAGTGCAGTTCAGAGTGTCAGAACCGCTTTCCCGGATGCCG TTGCAAAGCCCAGTGCAACACGAAGCAGTGCCCGTGTTATCTGGCTGTCCGAGAGTGTGA CCCTGACCTCTGTCTTACTTGTGGAGCTGCTGACCACTGGGATAGTAAGAATGTGTCCTG CAAGAACTGTAGCATTCAGCGGGGGTCCAAGAAGCATTTACTGCTGGCACCATCTGATGT GGCAGGCTGGGGGATTTTCATCAAAGATCCTGTACAGAAAAATGAATTCATCTCGGAATA CTGTGGGGAGATAATTTCTCAAGATGAAGCAGACAGAAGAGGGAAAGTGTATGATAAATA CATGTGCAGCTTTCTCTTCAACTTGAACAATGATTTTGTGGTGGATGCAACCCGCAAGGG TAACAAAATTCGTTTTGCAAATCACTCAGTAAATCCAAACTGCTATGCAAAAGTGATGAT GGTTAATGGCGATCACAGGATAGGGATTTTTGCCAAGAGAGCCATCCAGACTGGCGAGGA GCTGTTTTTTGATTACAGATACAGCCAGGCTGATGCGCTGAAGTACGTGGGCATCGAAAG AGAAATGGAGATCCCTTGACGTCCGCTACCTCTTCCCCTCCTCTCTGGAACAGCTGCCTT AGCTTCAGGAACCTCGAGTACTGTGGGCAATTTAGGAAAAGAAAATGCAGTTTGAAACTC TCAATTTGCAAAGTACTGTAATAATAATTTATAGTCATGAGTTTAAAAATCAACTTTTTA TTGCCTTCTCACCAGCTGCAAAAGTGTTTTGTACCAGTGAATTTTTGCAATAATGCAGTG TGGTACATTTTTCAACTTGGAATAAACAATACTTGAACTTCAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACCGAGGATGTGGACACTCCTCCCAGAAAGAAGAAGAGGAAACACCGGTTGTGGGCTGC ACACTGCAGAAAGATACAACTGAAAAAGGATGGCTCCTCCAACCACGTTTACAACTATCA GCCCTGCGACCACCCACGGCAGCCTTGCGACAGTTCGTGCCCTTGTGTGATTGCACAAAA TTTTTGTGAAAAGTTTTGTCAGTGCAGTTCAGAGTGTCAGAACCGCTTTCCCGGATGCCG TTGCAAAGCCCAGTGCAACACGAAGCAGTGCCCGTGTTATCTGGCTGTCCGAGAGTGTGA CCCTGACCTCTGTCTTACTTGTGGAGCTGCTGACCACTGGGATAGTAAGAATGTGTCCTG CAAGAACTGTAGCATTCAGCGGGGGTCCAAGAAGCATTTACTGCTGGCACCATCTGATGT GGCAGGCTGGGGGATTTTCATCAAAGATCCTGTACAGAAAAATGAATTCATCTCGGAATA CTGTGGGGAGATAATTTCTCAAGATGAAGCAGACAGAAGAGGGAAAGTGTATGATAAATA CATGTGCAGCTTTCTCTTCAACTTGAACAATGATTTTGTGGTGGATGCAACCCGCAAGGG TAACAAAATTCGTTTTGCAAATCACTCAGTAAATCCAAACTGCTATGCAAAAGTGATGAT GGTTAATGGCGATCACAGGATAGGGATTTTTGCCAAGAGAGCCATCCAGACTGGCGAGGA GCTGTTTTTTGATTACAGATACAGCCAGGCTGATGCGCTGAAGTACGTGGGCATCGAAAG AGAAATGGAGATCCCTTGACGTCCGCTACCTCTTCCCCTCCTCTCTGGAACAGCTGCCTT AGCTTCAGGAACCTCGAGTACTGTGGGCAATTTAGGAAAAGAAAATGCAGTTTGAAACTC TCAATTTGCAAAGTACTGTAATAATAATTTATAGTCATGAGTTTAAAAATCAACTTTTTA TTGCCTTCTCACCAGCTGCAAAAGTGTTTTGTACCAGTGAATTTTTGCAATAATGCAGTG TGGTACATTTTTCAACTTGGAATAAACAATACTTGAACTTCAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 934-1051, - strand, RNAz p=0.571992 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 934-1051, - strand, RNAz p=0.571992 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 216-394, gnl|bosTau2|chr19 (39007921-39008099) | |
| 216-394, gnl|canFam2|chr9 (23605388-23605182) | |
| 216-394, gnl|danRer3|chr3 (32784693-32784509) | |
| 216-394, gnl|dasNov1|scaffold_9958 (52609-52801) | |
| 216-394, gnl|echTel1|scaffold_274116 (7379-7187) | |
| 216-394, gnl|fr1|chrUn (22800876-22801073) | |
| 216-394, gnl|galGal2|chr27_random (179386-179203) | |
| 216-394, gnl|hg17|chr17 (38111541-38111733) | |
| 216-394, gnl|Hg17|chr17 (38111729-38111551) | |
| 216-394, gnl|loxAfr1|scaffold_30398 (15247-15055) | |
| 216-394, gnl|mm7|chr11 (101304548-101304740) | |
| 216-394, gnl|Mm7|chr11 (101304736-101304558) | |
| 216-394, gnl|monDom2|scaffold_18 (53188034-53188238) | |
| 216-394, gnl|oryCun1|scaffold_206438 (11144-10952) | |
| 216-394, gnl|panTro1|chr19 (41297254-41297446) | |
| 216-394, gnl|rheMac2|chr16 (52828560-52828752) | |
| 216-394, gnl|rn3|chr10 (90230160-90230352) | |
| 216-394, gnl|tetNig1|chr3 (12440791-12440974) | |
| 216-394, gnl|xenTro1|scaffold_92 (919227-919044) | |
| 736-1061, gnl|bosTau2|chr4 (66252376-66252703) | |
| 736-1061, gnl|Hg17|chr7 (147942449-147942125) | |
| 736-1061, gnl|Mm7|chr6 (47567300-47566978) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 216-394, gnl|bosTau2|chr19 (39007921-39008099) | |
| 216-394, gnl|canFam2|chr9 (23605388-23605182) | |
| 216-394, gnl|danRer3|chr3 (32784693-32784509) | |
| 216-394, gnl|dasNov1|scaffold_9958 (52609-52801) | |
| 216-394, gnl|echTel1|scaffold_274116 (7379-7187) | |
| 216-394, gnl|fr1|chrUn (22800876-22801073) | |
| 216-394, gnl|galGal2|chr27_random (179386-179203) | |
| 216-394, gnl|hg17|chr17 (38111541-38111733) | |
| 216-394, gnl|Hg17|chr17 (38111729-38111551) | |
| 216-394, gnl|loxAfr1|scaffold_30398 (15247-15055) | |
| 216-394, gnl|mm7|chr11 (101304548-101304740) | |
| 216-394, gnl|Mm7|chr11 (101304736-101304558) | |
| 216-394, gnl|monDom2|scaffold_18 (53188034-53188238) | |
| 216-394, gnl|oryCun1|scaffold_206438 (11144-10952) | |
| 216-394, gnl|panTro1|chr19 (41297254-41297446) | |
| 216-394, gnl|rheMac2|chr16 (52828560-52828752) | |
| 216-394, gnl|rn3|chr10 (90230160-90230352) | |
| 216-394, gnl|tetNig1|chr3 (12440791-12440974) | |
| 216-394, gnl|xenTro1|scaffold_92 (919227-919044) | |
| 736-1061, gnl|bosTau2|chr4 (66252376-66252703) | |
| 736-1061, gnl|Hg17|chr7 (147942449-147942125) | |
| 736-1061, gnl|Mm7|chr6 (47567300-47566978) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| thg (0.380373) | |
| cte (0.29274) | |
| spl (0.286369) | |
| tes (0.207814) | |
| sin (0.174948) | |
| cut (0.169924) | |
| ret (0.128733) | |
| ebs (0.118301) | |
| jej (0.0989218) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| thg (0.380373) | |
| cte (0.29274) | |
| spl (0.286369) | |
| tes (0.207814) | |
| sin (0.174948) | |
| cut (0.169924) | |
| ret (0.128733) | |
| ebs (0.118301) | |
| jej (0.0989218) |