Non-Coding RNA Search

Ss1.1-rsag001_e19.5

Sequence:


               
               TCAGGCTCGGATTAACAGCTCGGAGCCAGAGACCGGAGGGATGCTAACTAAATTCGAGAC
CAAGAGCGCGCGAGTCAAAGGGCTCAGTTTTCACCCCAAAAGACCCTGGATCCTGACAAG
TTTACACAATGGGGTTATCCAGTTATGGGATTATCGGATGTGTACCCTCATTGACAAGTT
TGATGAACATGATGGTCCGGTACGAGGCATTGACTTCCATAAGCAGCAGCCACTGTTTGT
CTCTGGAGGAGATGACTATAAGATTAAGGTATAGAGGGTCGGTCCTGACTGGAAGTAAAG
GACAAACAATGTGAAATTTGGGAATTATGGAAGGGATAAAAAAAACAGACATCTCATGTA
TACAGAACTCAGGCTTTTCACATTATCTGGAGCACTTATCCAGCAAACATTTATTGAATG
CTTACTGTGTATCAGACAGTGTTCTATATTTTTGGAATTCAAAAATAAATAAGATATGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAGGCTCGGATTAACAGCTCGGAGCCAGAGACCGGAGGGATGCTAACTAAATTCGAGAC
CAAGAGCGCGCGAGTCAAAGGGCTCAGTTTTCACCCCAAAAGACCCTGGATCCTGACAAG
TTTACACAATGGGGTTATCCAGTTATGGGATTATCGGATGTGTACCCTCATTGACAAGTT
TGATGAACATGATGGTCCGGTACGAGGCATTGACTTCCATAAGCAGCAGCCACTGTTTGT
CTCTGGAGGAGATGACTATAAGATTAAGGTATAGAGGGTCGGTCCTGACTGGAAGTAAAG
GACAAACAATGTGAAATTTGGGAATTATGGAAGGGATAAAAAAAACAGACATCTCATGTA
TACAGAACTCAGGCTTTTCACATTATCTGGAGCACTTATCCAGCAAACATTTATTGAATG
CTTACTGTGTATCAGACAGTGTTCTATATTTTTGGAATTCAAAAATAAATAAGATATGGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               365-479, - strand, RNAz p=0.728388

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               365-479, - strand, RNAz p=0.728388

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               194-479, gnl|bosTau2|chr3 (4721357-4721638)
               

               
               194-479, gnl|Hg17|chr1 (157122846-157122555)
               

               
               194-479, gnl|Mm7|chr1 (172059269-172059553)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               194-479, gnl|bosTau2|chr3 (4721357-4721638)
               

               
               194-479, gnl|Hg17|chr1 (157122846-157122555)
               

               
               194-479, gnl|Mm7|chr1 (172059269-172059553)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               cje (0.330469)
               

               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               nje (0.16592)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.330469)
               

               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               nje (0.16592)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)

	194-479, gnl\|bosTau2\|chr3 (4721357-4721638)
	194-479, gnl\|Hg17\|chr1 (157122846-157122555)
	194-479, gnl\|Mm7\|chr1 (172059269-172059553)

	cje (0.330469)
	cbe (0.239234)
	hea (0.204499)
	cmu (0.186393)
	sag (0.182715)
	nje (0.16592)
	sug (0.127291)
	thg (0.126791)
	pgl (0.118483)