Non-Coding RNA Search

Ss1.1-rsag001_f12.5

Sequence:


               
               GTCAGATTTGAGAAATTTTCTACTAGAGAGCCTTAGAAGTATTGATTAGCCAGAAACAAT
TAAAGCTCTCCAGAGAAAGGAATGCTCCTTTATGCCAACTGTCTTCATCTTTCCATGAGC
TTGAGTCCTGTATCTGAATCTAAAGAGTGAGATTTATAAGAGCTCCTTTAATTGGTCTAT
ATATTTGACATAGTGTGGACTTTGATCCACTTTACCTGAAGTTTAGTTGTGAGAATTCAA
CTACCGAAGAACTGTTGTTGGAAGTTTCTGTGTGGTGCATCAGATTAAGGAACTGGGATT
GCTATATCTGTGGCCCAGGCTGCAGTGGTGTGCGGTTTGATCCTTGGCCCAGGAACTTCA
TCTTTCCATGTACTGCTGGTACAGCCAAAAAAAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCAGATTTGAGAAATTTTCTACTAGAGAGCCTTAGAAGTATTGATTAGCCAGAAACAAT
TAAAGCTCTCCAGAGAAAGGAATGCTCCTTTATGCCAACTGTCTTCATCTTTCCATGAGC
TTGAGTCCTGTATCTGAATCTAAAGAGTGAGATTTATAAGAGCTCCTTTAATTGGTCTAT
ATATTTGACATAGTGTGGACTTTGATCCACTTTACCTGAAGTTTAGTTGTGAGAATTCAA
CTACCGAAGAACTGTTGTTGGAAGTTTCTGTGTGGTGCATCAGATTAAGGAACTGGGATT
GCTATATCTGTGGCCCAGGCTGCAGTGGTGTGCGGTTTGATCCTTGGCCCAGGAACTTCA
TCTTTCCATGTACTGCTGGTACAGCCAAAAAAAGAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               10-109, - strand, RNAz p=0.938963

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               10-109, - strand, RNAz p=0.938963

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-164, gnl|bosTau2|chr19 (7927375-7927213)
               

               
               1-164, gnl|canFam2|chr9 (41172775-41172527)
               

               
               1-164, gnl|echTel1|scaffold_323027 (51757-51510)
               

               
               1-164, gnl|hg17|chr17 (31186708-31186946)
               

               
               1-164, gnl|Hg17|chr17 (31186841-31186992)
               

               
               1-164, gnl|loxAfr1|scaffold_3121 (30140-29889)
               

               
               1-164, gnl|mm7|chr11 (83568431-83568692)
               

               
               1-164, gnl|Mm7|chr11 (83568567-83568755)
               

               
               1-164, gnl|oryCun1|scaffold_179967 (38600-38844)
               

               
               1-164, gnl|panTro1|chr19 (34713002-34713240)
               

               
               1-164, gnl|rheMac2|chr16 (31104882-31105123)
               

               
               1-164, gnl|rn3|chr10 (71594299-71594562)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-164, gnl|bosTau2|chr19 (7927375-7927213)
               

               
               1-164, gnl|canFam2|chr9 (41172775-41172527)
               

               
               1-164, gnl|echTel1|scaffold_323027 (51757-51510)
               

               
               1-164, gnl|hg17|chr17 (31186708-31186946)
               

               
               1-164, gnl|Hg17|chr17 (31186841-31186992)
               

               
               1-164, gnl|loxAfr1|scaffold_3121 (30140-29889)
               

               
               1-164, gnl|mm7|chr11 (83568431-83568692)
               

               
               1-164, gnl|Mm7|chr11 (83568567-83568755)
               

               
               1-164, gnl|oryCun1|scaffold_179967 (38600-38844)
               

               
               1-164, gnl|panTro1|chr19 (34713002-34713240)
               

               
               1-164, gnl|rheMac2|chr16 (31104882-31105123)
               

               
               1-164, gnl|rn3|chr10 (71594299-71594562)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               sag (0.182715)
               

               
               csk (0.140746)
               

               
               eep (0.122564)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.182715)
               

               
               csk (0.140746)
               

               
               eep (0.122564)

	1-164, gnl\|bosTau2\|chr19 (7927375-7927213)
	1-164, gnl\|canFam2\|chr9 (41172775-41172527)
	1-164, gnl\|echTel1\|scaffold_323027 (51757-51510)
	1-164, gnl\|hg17\|chr17 (31186708-31186946)
	1-164, gnl\|Hg17\|chr17 (31186841-31186992)
	1-164, gnl\|loxAfr1\|scaffold_3121 (30140-29889)
	1-164, gnl\|mm7\|chr11 (83568431-83568692)
	1-164, gnl\|Mm7\|chr11 (83568567-83568755)
	1-164, gnl\|oryCun1\|scaffold_179967 (38600-38844)
	1-164, gnl\|panTro1\|chr19 (34713002-34713240)
	1-164, gnl\|rheMac2\|chr16 (31104882-31105123)
	1-164, gnl\|rn3\|chr10 (71594299-71594562)