Non-Coding RNA Search

Ss1.1-rsag017_h2.5

Sequence:


               
               CGCGGGAAGGGAGTGGAAATGAGGGTCGTGTTACCCAGCTGGCTGGGTAACAGCAGATGT
CAGGATAGTCTTTCCCTTTTGCATTTTCACATACTTACTGCATTGTTTTTCAACGGACCA
ATCACCAGAGACTAATTATTGCACTTAAGTATTGGCCTGAGATACTGCAACAGTCACCAA
TCCGTGGTTGCAGTATTGGGACGCTTAGAGCTAGGAGGTTTTGGTAGAACTGCTATGTAC
CTGAATCCTTTTTGAGAGAATTGAAATGTATCAACAATGCTTTCTTTGCCATATGAGTTT
GTTTTAAGGTTAACTCGTTCAATTTACTTACGTGTTCTAAACATCTTCCCCTCACATGTT
CTGTATTTTCATACATTGCACATTTACAACTAGGTTCTATAATGTATGCTTTGAAATTTA
CTTTTTTATAGTTTACAGGAATTTTATTTTTTGTGCCTATTTCTTTTTACACCTCTGTGA
ACCACGATGGAACAACTTAAATTTTGTGCCATAAAAATATTTTTGTGGTAAGGTACTATT
TTTTTAGCTCTAGGGATCTATCATCAAAAATCCATCATACAATTTGAGAGACATAATTTT
ATGTTGAATGAGCACAACATAATCTGAAGCCTTGCAAGGAGACAGCCAGCCAGACGGCAG
AGTGAAATGGTCTTGTTTTCATCGTTAATTTATTGTCATCCATGGGTTTCCTATTTGTAA
TAGCATCACGGGCTCATTGCACTTAATACCTGCAATGTTTGCTACTGTACCACTTGATTT
TCAATACTTTATTACAAAGGATGAAACTGTAATGTTTTATTAACAATGCTTCTGGAAATG
AATGCATTTTAAAGCAAATAAATCTTTTTGATAGACCTTTTACAAAATCCAGTTGCACTA
ATGAATGCTTTCTTATGGTAAATGAGCTAATATTTGTTACTGTGTACACCACTGTTTTGG
AATGTTCCAAAATAAAGACTATTTCAGCAATAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCGGGAAGGGAGTGGAAATGAGGGTCGTGTTACCCAGCTGGCTGGGTAACAGCAGATGT
CAGGATAGTCTTTCCCTTTTGCATTTTCACATACTTACTGCATTGTTTTTCAACGGACCA
ATCACCAGAGACTAATTATTGCACTTAAGTATTGGCCTGAGATACTGCAACAGTCACCAA
TCCGTGGTTGCAGTATTGGGACGCTTAGAGCTAGGAGGTTTTGGTAGAACTGCTATGTAC
CTGAATCCTTTTTGAGAGAATTGAAATGTATCAACAATGCTTTCTTTGCCATATGAGTTT
GTTTTAAGGTTAACTCGTTCAATTTACTTACGTGTTCTAAACATCTTCCCCTCACATGTT
CTGTATTTTCATACATTGCACATTTACAACTAGGTTCTATAATGTATGCTTTGAAATTTA
CTTTTTTATAGTTTACAGGAATTTTATTTTTTGTGCCTATTTCTTTTTACACCTCTGTGA
ACCACGATGGAACAACTTAAATTTTGTGCCATAAAAATATTTTTGTGGTAAGGTACTATT
TTTTTAGCTCTAGGGATCTATCATCAAAAATCCATCATACAATTTGAGAGACATAATTTT
ATGTTGAATGAGCACAACATAATCTGAAGCCTTGCAAGGAGACAGCCAGCCAGACGGCAG
AGTGAAATGGTCTTGTTTTCATCGTTAATTTATTGTCATCCATGGGTTTCCTATTTGTAA
TAGCATCACGGGCTCATTGCACTTAATACCTGCAATGTTTGCTACTGTACCACTTGATTT
TCAATACTTTATTACAAAGGATGAAACTGTAATGTTTTATTAACAATGCTTCTGGAAATG
AATGCATTTTAAAGCAAATAAATCTTTTTGATAGACCTTTTACAAAATCCAGTTGCACTA
ATGAATGCTTTCTTATGGTAAATGAGCTAATATTTGTTACTGTGTACACCACTGTTTTGG
AATGTTCCAAAATAAAGACTATTTCAGCAATAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               4-122, + strand, RNAz p=0.951623

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               4-122, + strand, RNAz p=0.951623

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_144595, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_144595, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-992, gnl|bosTau2|chr5 (7598614-7597623)
               

               
               4-992, gnl|Hg17|chr13 (77235383-77236367)
               

               
               4-992, gnl|Mm7|chr14 (98136329-98137300)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-992, gnl|bosTau2|chr5 (7598614-7597623)
               

               
               4-992, gnl|Hg17|chr13 (77235383-77236367)
               

               
               4-992, gnl|Mm7|chr14 (98136329-98137300)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               cbe (0.956938)
               

               
               spc (0.680195)
               

               
               fbs (0.350693)
               

               
               fco (0.314416)
               

               
               fce (0.271592)
               

               
               cbr (0.255951)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.956938)
               

               
               spc (0.680195)
               

               
               fbs (0.350693)
               

               
               fco (0.314416)
               

               
               fce (0.271592)
               

               
               cbr (0.255951)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

	4-992, gnl\|bosTau2\|chr5 (7598614-7597623)
	4-992, gnl\|Hg17\|chr13 (77235383-77236367)
	4-992, gnl\|Mm7\|chr14 (98136329-98137300)

	cbe (0.956938)
	spc (0.680195)
	fbs (0.350693)
	fco (0.314416)
	fce (0.271592)
	cbr (0.255951)
	cmu (0.186393)
	sag (0.182715)
	rec (0.17307)
	mga (0.160205)
	liv (0.146284)
	hyp (0.142837)
	lnt (0.142308)
	sug (0.127291)
	tra (0.123092)
	med (0.116252)
	ecc (0.115035)