Non-Coding RNA Search

Ss1.1-rsag020_m9.5

Sequence:


               
               GTCTCCAAGTGCCTGGGACAGGTGTGTCCTATTGCAGTAAGCTCAGTGCCGGTGGCCCTG
TGGCTAGTTAATATCAGCCTGAAACTAGACTTCCCCTTGGATCTGCCTTTCTTCTACTTG
TGTCTCCAGACAACCTCGCTTCATTCAGGTTGGTCAGGCTTGGGCAGGTGTGTGCTTTGC
TATATGTGTCTGTCTCTCTGCGTTATCTGGGGGTGCCTTGAATAAAAGAACTTCGCTTCG
CGACATACTGATTCTGGAACAAAAGCACTGCAAAAAACAAAAAAAGAGCTGGCAAAGTTA
CTAGGCCACCTTTTCCTTCTTTTCTGGGTTCCCTAACCATGACTCAGGCGTCAGAGGTGA
TGCTGCAGTAGGAAACGTTATTTTGTATAGTGTGCAAGTAAGTTATTAACTGTCTTTCTA
AAGGTATGCTGCTTTTAAGATGCACTATGATTTTGGATTTAATCCTTGTGTTGCTTTCCC
AAGGAAGTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTCCAAGTGCCTGGGACAGGTGTGTCCTATTGCAGTAAGCTCAGTGCCGGTGGCCCTG
TGGCTAGTTAATATCAGCCTGAAACTAGACTTCCCCTTGGATCTGCCTTTCTTCTACTTG
TGTCTCCAGACAACCTCGCTTCATTCAGGTTGGTCAGGCTTGGGCAGGTGTGTGCTTTGC
TATATGTGTCTGTCTCTCTGCGTTATCTGGGGGTGCCTTGAATAAAAGAACTTCGCTTCG
CGACATACTGATTCTGGAACAAAAGCACTGCAAAAAACAAAAAAAGAGCTGGCAAAGTTA
CTAGGCCACCTTTTCCTTCTTTTCTGGGTTCCCTAACCATGACTCAGGCGTCAGAGGTGA
TGCTGCAGTAGGAAACGTTATTTTGTATAGTGTGCAAGTAAGTTATTAACTGTCTTTCTA
AAGGTATGCTGCTTTTAAGATGCACTATGATTTTGGATTTAATCCTTGTGTTGCTTTCCC
AAGGAAGTAAAA

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

Help | Less info


               
               1-492, gnl|bosTau2|chr9 (33162302-33162798)
               

               
               1-492, gnl|canFam2|chr12 (52106252-52106807)
               

               
               1-492, gnl|dasNov1|scaffold_101494 (5064-5609)
               

               
               1-492, gnl|echTel1|scaffold_285257 (8849-9381)
               

               
               1-492, gnl|galGal2|chr3 (73748814-73748132)
               

               
               1-492, gnl|hg17|chr6 (90694964-90695521)
               

               
               1-492, gnl|Hg17|chr6 (90695596-90695093)
               

               
               1-492, gnl|loxAfr1|scaffold_97132 (4682-4123)
               

               
               1-492, gnl|mm7|chr4 (32862563-32862028)
               

               
               1-492, gnl|Mm7|chr4 (32862025-32862450)
               

               
               1-492, gnl|monDom2|scaffold_0 (138286735-138286149)
               

               
               1-492, gnl|oryCun1|scaffold_213159 (113027-112462)
               

               
               1-492, gnl|panTro1|chr5 (92416834-92417388)
               

               
               1-492, gnl|rheMac2|chr4 (85813151-85813723)
               

               
               1-492, gnl|rn3|chr5 (48884879-48884362)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-492, gnl|bosTau2|chr9 (33162302-33162798)
               

               
               1-492, gnl|canFam2|chr12 (52106252-52106807)
               

               
               1-492, gnl|dasNov1|scaffold_101494 (5064-5609)
               

               
               1-492, gnl|echTel1|scaffold_285257 (8849-9381)
               

               
               1-492, gnl|galGal2|chr3 (73748814-73748132)
               

               
               1-492, gnl|hg17|chr6 (90694964-90695521)
               

               
               1-492, gnl|Hg17|chr6 (90695596-90695093)
               

               
               1-492, gnl|loxAfr1|scaffold_97132 (4682-4123)
               

               
               1-492, gnl|mm7|chr4 (32862563-32862028)
               

               
               1-492, gnl|Mm7|chr4 (32862025-32862450)
               

               
               1-492, gnl|monDom2|scaffold_0 (138286735-138286149)
               

               
               1-492, gnl|oryCun1|scaffold_213159 (113027-112462)
               

               
               1-492, gnl|panTro1|chr5 (92416834-92417388)
               

               
               1-492, gnl|rheMac2|chr4 (85813151-85813723)
               

               
               1-492, gnl|rn3|chr5 (48884879-48884362)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               sag (0.182715)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.182715)

	1-492, gnl\|bosTau2\|chr9 (33162302-33162798)
	1-492, gnl\|canFam2\|chr12 (52106252-52106807)
	1-492, gnl\|dasNov1\|scaffold_101494 (5064-5609)
	1-492, gnl\|echTel1\|scaffold_285257 (8849-9381)
	1-492, gnl\|galGal2\|chr3 (73748814-73748132)
	1-492, gnl\|hg17\|chr6 (90694964-90695521)
	1-492, gnl\|Hg17\|chr6 (90695596-90695093)
	1-492, gnl\|loxAfr1\|scaffold_97132 (4682-4123)
	1-492, gnl\|mm7\|chr4 (32862563-32862028)
	1-492, gnl\|Mm7\|chr4 (32862025-32862450)
	1-492, gnl\|monDom2\|scaffold_0 (138286735-138286149)
	1-492, gnl\|oryCun1\|scaffold_213159 (113027-112462)
	1-492, gnl\|panTro1\|chr5 (92416834-92417388)
	1-492, gnl\|rheMac2\|chr4 (85813151-85813723)
	1-492, gnl\|rn3\|chr5 (48884879-48884362)