Non-Coding RNA Search

Ss1.1-rsag035_b8.5

Sequence:


               
               GGAAATATGGGCTGAGTTTTACAAGGCAAACTTAGTTTTTTCATTTTTGACTTGGTTCAT
TCATCCCATGAAATGCTTTTCTGACTCCAAAATCCATTTCAGTGCATTTCCAAATACCAA
AAATGTGGGCATCAGTTTTATACAAGAACATAGAAAATGCATGTAGATGAAAGCACAGTG
AAAAATATTTACAAATCTTTAATTTTGAAGGCCAGCCAATGAAATGTTTACATGCACCCA
ACCAGGCTTGCTTCAAAATATGTATTTGTTCTAATTATATTTCGGACTTACATTTTCGAT
TTAGCCTTCCTAACCTGTACTTATGGCAATTTTTAAAAATTCAGAATTATTTCATATATT
ATTATGCCCTTGGAAGTTTAAAACATTGGAAATATAAGCCCAGTCCAGGCCTGGAGAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAATATGGGCTGAGTTTTACAAGGCAAACTTAGTTTTTTCATTTTTGACTTGGTTCAT
TCATCCCATGAAATGCTTTTCTGACTCCAAAATCCATTTCAGTGCATTTCCAAATACCAA
AAATGTGGGCATCAGTTTTATACAAGAACATAGAAAATGCATGTAGATGAAAGCACAGTG
AAAAATATTTACAAATCTTTAATTTTGAAGGCCAGCCAATGAAATGTTTACATGCACCCA
ACCAGGCTTGCTTCAAAATATGTATTTGTTCTAATTATATTTCGGACTTACATTTTCGAT
TTAGCCTTCCTAACCTGTACTTATGGCAATTTTTAAAAATTCAGAATTATTTCATATATT
ATTATGCCCTTGGAAGTTTAAAACATTGGAAATATAAGCCCAGTCCAGGCCTGGAGAAGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               207-311, - strand, RNAz p=0.999561

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               207-311, - strand, RNAz p=0.999561

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-420, gnl|bosTau2|chr17 (19444067-19444498)
               

               
               2-420, gnl|Hg17|chr4 (124593035-124593486)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-420, gnl|bosTau2|chr17 (19444067-19444498)
               

               
               2-420, gnl|Hg17|chr4 (124593035-124593486)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               tes (0.207814)
               

               
               sag (0.182715)
               

               
               lin (0.145603)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               sag (0.182715)
               

               
               lin (0.145603)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)

	2-420, gnl\|bosTau2\|chr17 (19444067-19444498)
	2-420, gnl\|Hg17\|chr4 (124593035-124593486)

	tes (0.207814)
	sag (0.182715)
	lin (0.145603)
	lyg (0.133103)
	kid (0.129735)