Non-Coding RNA Search

Ss1.1-rsag040_b24.5

Sequence:


               
               GGCAGTCATGACTGTTCAATACGTTTATGGAACCTAGAAAGTAAGACGTGTATCCAAGAG
TTTACAGCGCATCGGAAGAAGTTTGAAGAGTCAATTCATGATGTAGCTTTCCACCCATCC
AAATGCTATATAGCCAGTGCTGGGGCTGATGCACTGGCTAAAGTCTTTGTATGACACAAT
GCATCGTCTTCACCTTCTAGCTCTTTATAAATAATCAACTGCACAAAAGATATACAGAAG
ACCAGGGCAAGAAATTAACCCATCCAGCCCTTTGTTCTGCTGAAGGAGCACATAGAACAT
TTGTTAAAGTATAGTTTTGCAATTCGTTTACTGTTTTCTAAAACTAAGGTTTGTTCAGGT
TGCTGCAAGCTCAGCTGAATCTGTAAGCCTGAAAACTTTAACATTTTTCCCAAAATAGGA
GCTTTTATTTCTGAGGTGGTTCTAATTCGCTAGGCAGGCCTGAGCGAAGAACCTAGATTT
AGCTTGTCCCTGTTGAGTAAATAGGGCACATTATAAGGGATAATTAAAAAGCTTGATGGC
TGGGAATGAGTGGAGGAAGAATGGAAACTTAGACCTAGTTCACCCCTGAGAAATCTTGTT
ACATTAGGTAGTCAAAACAATAGTCTTTATCATACCTGCTGTAGTAACCCCCATGTATAT
AATGACCAGGCAGTGTTAAAATGAGTTTTTAATTTAGCTCTCCTTTCAATTGTTCATATA
AAGCACCTGAAAAAACATTTTACCTATTAGAAGGAAAAAGGGAAATGCAATAATATGTTA
AATATATTATTACTCAGAAATGCTAAACAAATATTTAGTTTGTAAGCAGATTTCTATATT
GTATTACATTTTTGAAAATAGATTTGGTACCATTCTAAAGTTTAGCATCAGAAACACTCA
CTGTTATGAAGAATAGTTGATAGAGTCTGCTTTTACTAAAGGATTTAACTTATTCAAGTT
TAAGATTCTGTTTATTTTTAAGGGCAAGCAGGGCATATCTTTATAATAATTTCTATTAAT
TTTAAAATTCACTCTATTCATGTGATATTTATAGTGCCAGAGTGATTATTTCATATCAAT
GAAATCTTACCTTTCAGTGGTTGAAAAGCTGAAAGTTATTTACGAGTACTCATCTGTCAA
AACCTATATAACCATGCCTCATGATCTCTACTCCTTCTTTGTCTCTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAGTCATGACTGTTCAATACGTTTATGGAACCTAGAAAGTAAGACGTGTATCCAAGAG
TTTACAGCGCATCGGAAGAAGTTTGAAGAGTCAATTCATGATGTAGCTTTCCACCCATCC
AAATGCTATATAGCCAGTGCTGGGGCTGATGCACTGGCTAAAGTCTTTGTATGACACAAT
GCATCGTCTTCACCTTCTAGCTCTTTATAAATAATCAACTGCACAAAAGATATACAGAAG
ACCAGGGCAAGAAATTAACCCATCCAGCCCTTTGTTCTGCTGAAGGAGCACATAGAACAT
TTGTTAAAGTATAGTTTTGCAATTCGTTTACTGTTTTCTAAAACTAAGGTTTGTTCAGGT
TGCTGCAAGCTCAGCTGAATCTGTAAGCCTGAAAACTTTAACATTTTTCCCAAAATAGGA
GCTTTTATTTCTGAGGTGGTTCTAATTCGCTAGGCAGGCCTGAGCGAAGAACCTAGATTT
AGCTTGTCCCTGTTGAGTAAATAGGGCACATTATAAGGGATAATTAAAAAGCTTGATGGC
TGGGAATGAGTGGAGGAAGAATGGAAACTTAGACCTAGTTCACCCCTGAGAAATCTTGTT
ACATTAGGTAGTCAAAACAATAGTCTTTATCATACCTGCTGTAGTAACCCCCATGTATAT
AATGACCAGGCAGTGTTAAAATGAGTTTTTAATTTAGCTCTCCTTTCAATTGTTCATATA
AAGCACCTGAAAAAACATTTTACCTATTAGAAGGAAAAAGGGAAATGCAATAATATGTTA
AATATATTATTACTCAGAAATGCTAAACAAATATTTAGTTTGTAAGCAGATTTCTATATT
GTATTACATTTTTGAAAATAGATTTGGTACCATTCTAAAGTTTAGCATCAGAAACACTCA
CTGTTATGAAGAATAGTTGATAGAGTCTGCTTTTACTAAAGGATTTAACTTATTCAAGTT
TAAGATTCTGTTTATTTTTAAGGGCAAGCAGGGCATATCTTTATAATAATTTCTATTAAT
TTTAAAATTCACTCTATTCATGTGATATTTATAGTGCCAGAGTGATTATTTCATATCAAT
GAAATCTTACCTTTCAGTGGTTGAAAAGCTGAAAGTTATTTACGAGTACTCATCTGTCAA
AACCTATATAACCATGCCTCATGATCTCTACTCCTTCTTTGTCTCTTG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               45-323, - strand, RNAz p=0.8881
               

               
               402-514, + strand, RNAz p=0.763602

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               45-323, - strand, RNAz p=0.8881
               

               
               402-514, + strand, RNAz p=0.763602

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               95-198, - strand, RNAmicro p=0.962845

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               95-198, - strand, RNAmicro p=0.962845

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_003162, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_003162, +

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               5-673, gnl|bosTau2|chr19 (36311992-36311317)
               

               
               5-673, gnl|Hg17|chr2 (36988419-36987748)
               

               
               5-673, gnl|Mm7|chr17 (76956213-76955558)
               


               
               1003-1186, gnl|bosTau2|chr19 (36311266-36311091)
               

               
               1003-1186, gnl|canFam2|chr17 (32375866-32376165)
               

               
               1003-1186, gnl|dasNov1|scaffold_25979 (11384-11666)
               

               
               1003-1186, gnl|echTel1|scaffold_322978 (80309-80600)
               

               
               1003-1186, gnl|hg17|chr2 (36987155-36987445)
               

               
               1003-1186, gnl|Hg17|chr2 (36987426-36987246)
               

               
               1003-1186, gnl|loxAfr1|scaffold_20133 (21790-22078)
               

               
               1003-1186, gnl|mm7|chr17 (76954966-76955259)
               

               
               1003-1186, gnl|Mm7|chr17 (76955247-76955063)
               

               
               1003-1186, gnl|monDom2|scaffold_1 (135149324-135148990)
               

               
               1003-1186, gnl|oryCun1|scaffold_211919 (4568-4284)
               

               
               1003-1186, gnl|panTro1|chr12 (38441855-38442145)
               

               
               1003-1186, gnl|rheMac2|chr13 (36826494-36826779)
               

               
               1003-1186, gnl|rn3|chr6 (1428086-1428366)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-673, gnl|bosTau2|chr19 (36311992-36311317)
               

               
               5-673, gnl|Hg17|chr2 (36988419-36987748)
               

               
               5-673, gnl|Mm7|chr17 (76956213-76955558)
               


               
               1003-1186, gnl|bosTau2|chr19 (36311266-36311091)
               

               
               1003-1186, gnl|canFam2|chr17 (32375866-32376165)
               

               
               1003-1186, gnl|dasNov1|scaffold_25979 (11384-11666)
               

               
               1003-1186, gnl|echTel1|scaffold_322978 (80309-80600)
               

               
               1003-1186, gnl|hg17|chr2 (36987155-36987445)
               

               
               1003-1186, gnl|Hg17|chr2 (36987426-36987246)
               

               
               1003-1186, gnl|loxAfr1|scaffold_20133 (21790-22078)
               

               
               1003-1186, gnl|mm7|chr17 (76954966-76955259)
               

               
               1003-1186, gnl|Mm7|chr17 (76955247-76955063)
               

               
               1003-1186, gnl|monDom2|scaffold_1 (135149324-135148990)
               

               
               1003-1186, gnl|oryCun1|scaffold_211919 (4568-4284)
               

               
               1003-1186, gnl|panTro1|chr12 (38441855-38442145)
               

               
               1003-1186, gnl|rheMac2|chr13 (36826494-36826779)
               

               
               1003-1186, gnl|rn3|chr6 (1428086-1428366)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               ece (0.229305)
               

               
               sag (0.182715)
               

               
               fhi (0.169578)
               

               
               eli (0.151814)
               

               
               pla (0.133672)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               sag (0.182715)
               

               
               fhi (0.169578)
               

               
               eli (0.151814)
               

               
               pla (0.133672)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

	45-323, - strand, RNAz p=0.8881
	402-514, + strand, RNAz p=0.763602

	5-673, gnl\|bosTau2\|chr19 (36311992-36311317)
	5-673, gnl\|Hg17\|chr2 (36988419-36987748)
	5-673, gnl\|Mm7\|chr17 (76956213-76955558)

	1003-1186, gnl\|bosTau2\|chr19 (36311266-36311091)
	1003-1186, gnl\|canFam2\|chr17 (32375866-32376165)
	1003-1186, gnl\|dasNov1\|scaffold_25979 (11384-11666)
	1003-1186, gnl\|echTel1\|scaffold_322978 (80309-80600)
	1003-1186, gnl\|hg17\|chr2 (36987155-36987445)
	1003-1186, gnl\|Hg17\|chr2 (36987426-36987246)
	1003-1186, gnl\|loxAfr1\|scaffold_20133 (21790-22078)
	1003-1186, gnl\|mm7\|chr17 (76954966-76955259)
	1003-1186, gnl\|Mm7\|chr17 (76955247-76955063)
	1003-1186, gnl\|monDom2\|scaffold_1 (135149324-135148990)
	1003-1186, gnl\|oryCun1\|scaffold_211919 (4568-4284)
	1003-1186, gnl\|panTro1\|chr12 (38441855-38442145)
	1003-1186, gnl\|rheMac2\|chr13 (36826494-36826779)
	1003-1186, gnl\|rn3\|chr6 (1428086-1428366)

	ece (0.229305)
	sag (0.182715)
	fhi (0.169578)
	eli (0.151814)
	pla (0.133672)
	bla (0.124347)
	spc (0.113366)