Non-Coding RNA Search

Ss1.1-rsag08_b1.5

Sequence:


               
               TAGGGCTGCCCCCATGCCATATGGAAGTTCCCAGGCTAGGGGTCTAAACTGAGCTACAGC
TGCCGGCCTACGCCACAGCCACAGCAATGCCAGATCCTTCAACCCACTGAGCGGGGCCAC
GGATTGAACCTGCATCCTCATGGATGCTAGTCGGGTTCGTTTCCACTGAGCCACAAGGGG
AACTCCAAAGAAAGGATTTTATGCTTTAAACATTGGTTCTTGTGTTAAGAACTCACTGTT
GTTTAAAGTTTTTAAATCTTTAGGGACGGTCCGGGAGTGAACTGTGAACTTTGACACTCT
AGGCAATCAGGTCCTAATACCTAAAATGTACTCTTTGGGTCTCCCAGAATTCGCCCTTCC
GATAACTGTTCTCTCTCATCATTTCTCTTCAGATAAGGAAATTGGGCCCCTGCAATAAAG
TCTCTGAAGTGAAACTGCTTGTTTTCTAGCTTGCAGTTTTGGTTAAGTCTGTTTTATGAC
TGCATGGATAAAGTCCCTGGCCTTTTCATATTTCAGCTACTACAGATAGTGCATTCCACC
AGGCCTCCTATTAATTTTTTTTCTGTGTATAAATGCTTAAGAGGTTTGTATTTCATGTTA
TCCTGGTAATAAAGATCACGTAAAAGTAACAGATGTGTGAAATTTGAAGATTGTAAATAC
ATGTTTACTTTTTTAAAAATCAAAGTTGAAACCTACTGGTTAGAATTTTGTTGTGTATTT
TTAAATGCTTTTTATCTTTTATGGTTTACATACTTCTTTTTAAACCAGCTAGGCTGTTTC
ATTATATCAAAGTATCCAATTACATTTATAATTCAATTGTGACTTGAATTGTATCTTTGG
GGAATGTTGGAGCTTTGTACATATTTTATAATTATTAAACCTGGTGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGGGCTGCCCCCATGCCATATGGAAGTTCCCAGGCTAGGGGTCTAAACTGAGCTACAGC
TGCCGGCCTACGCCACAGCCACAGCAATGCCAGATCCTTCAACCCACTGAGCGGGGCCAC
GGATTGAACCTGCATCCTCATGGATGCTAGTCGGGTTCGTTTCCACTGAGCCACAAGGGG
AACTCCAAAGAAAGGATTTTATGCTTTAAACATTGGTTCTTGTGTTAAGAACTCACTGTT
GTTTAAAGTTTTTAAATCTTTAGGGACGGTCCGGGAGTGAACTGTGAACTTTGACACTCT
AGGCAATCAGGTCCTAATACCTAAAATGTACTCTTTGGGTCTCCCAGAATTCGCCCTTCC
GATAACTGTTCTCTCTCATCATTTCTCTTCAGATAAGGAAATTGGGCCCCTGCAATAAAG
TCTCTGAAGTGAAACTGCTTGTTTTCTAGCTTGCAGTTTTGGTTAAGTCTGTTTTATGAC
TGCATGGATAAAGTCCCTGGCCTTTTCATATTTCAGCTACTACAGATAGTGCATTCCACC
AGGCCTCCTATTAATTTTTTTTCTGTGTATAAATGCTTAAGAGGTTTGTATTTCATGTTA
TCCTGGTAATAAAGATCACGTAAAAGTAACAGATGTGTGAAATTTGAAGATTGTAAATAC
ATGTTTACTTTTTTAAAAATCAAAGTTGAAACCTACTGGTTAGAATTTTGTTGTGTATTT
TTAAATGCTTTTTATCTTTTATGGTTTACATACTTCTTTTTAAACCAGCTAGGCTGTTTC
ATTATATCAAAGTATCCAATTACATTTATAATTCAATTGTGACTTGAATTGTATCTTTGG
GGAATGTTGGAGCTTTGTACATATTTTATAATTATTAAACCTGGTGTT

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               571-724, gnl|bosTau2|chr3 (50595614-50595771)
               


               
               765-888, gnl|bosTau2|chr3 (50595424-50595301)
               

               
               765-888, gnl|Hg17|chr5 (68886017-68886141)
               

               
               765-888, gnl|Mm7|chr13 (97585588-97585475)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               571-724, gnl|bosTau2|chr3 (50595614-50595771)
               


               
               765-888, gnl|bosTau2|chr3 (50595424-50595301)
               

               
               765-888, gnl|Hg17|chr5 (68886017-68886141)
               

               
               765-888, gnl|Mm7|chr13 (97585588-97585475)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

Help | Less info


               
               sag (0.36543)
               

               
               aor (0.195274)
               

               
               sin (0.174948)
               

               
               cje (0.165235)
               

               
               mga (0.160205)
               

               
               lin (0.145603)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               cty (0.10408)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.36543)
               

               
               aor (0.195274)
               

               
               sin (0.174948)
               

               
               cje (0.165235)
               

               
               mga (0.160205)
               

               
               lin (0.145603)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               cty (0.10408)

	571-724, gnl\|bosTau2\|chr3 (50595614-50595771)

	765-888, gnl\|bosTau2\|chr3 (50595424-50595301)
	765-888, gnl\|Hg17\|chr5 (68886017-68886141)
	765-888, gnl\|Mm7\|chr13 (97585588-97585475)

	sag (0.36543)
	aor (0.195274)
	sin (0.174948)
	cje (0.165235)
	mga (0.160205)
	lin (0.145603)
	ret (0.128733)
	bla (0.124347)
	cty (0.10408)