Ss1.1-rsag10_g15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGAAGTCACACTAATCATCTGGTTACATTGAAAGACCTCAGCTGATTCGCGCGAAAGTGC CAATTGTGAAGTTCAGGGATAAAGTGAGTTGTGTGGAGTTTGACTTGAATGTAAACAATA TTGTTGGAATAAGAAACACATTCCTTCTCAGAACTTATGCATACCTTGAAAATCGAGTTC GTCCGTTAGTACTGGTGATTAAGAAGTGGGCGAGTCACCATGAGATAAATGATGCCAGTC GTGGTACTTTAAGCAGCTATAGTCTTGTATTGATGGTTTTGCACTATTTACAGACCCTAC CTGAACCTATCCTTCCATCCATCCAAAAAATGTACCCAGAATCTTTTAGTCCTGCCCTAC AGCTGCACCTCGTACATCAAGCTCCATATAATGTTCCTCCTTACCTCTCAAAGAACGAAT CAAATCTTGGGGACCTCTTATTGGGCTTTCTTAAATATTATGCTACAGAATTTGACTGGA ACAGTCAGATGATTTCAGTTCGTGAAGCCAAAGCCATTCCCAGGCCTGATGGTATTGAAT GGAGAAATAAATTCATCTGTGTAGAAGAACCTTTTGATGGAACAAATACAGCCAGAGCTG TGCATGAAAAGCAGAAGTTTGATGTGATCAAGGATCAATTTTTAAAGTCATGGCACCGAT TGAAAAACAAACGGGATTTGAACAGTATACTACCTTTAAGAGCTGCTATCCTGAAAAGAT AACTGGCCTCTATTTCTTAATAAAGAACAGTAGTAACATCATAAGGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGAAGTCACACTAATCATCTGGTTACATTGAAAGACCTCAGCTGATTCGCGCGAAAGTGC CAATTGTGAAGTTCAGGGATAAAGTGAGTTGTGTGGAGTTTGACTTGAATGTAAACAATA TTGTTGGAATAAGAAACACATTCCTTCTCAGAACTTATGCATACCTTGAAAATCGAGTTC GTCCGTTAGTACTGGTGATTAAGAAGTGGGCGAGTCACCATGAGATAAATGATGCCAGTC GTGGTACTTTAAGCAGCTATAGTCTTGTATTGATGGTTTTGCACTATTTACAGACCCTAC CTGAACCTATCCTTCCATCCATCCAAAAAATGTACCCAGAATCTTTTAGTCCTGCCCTAC AGCTGCACCTCGTACATCAAGCTCCATATAATGTTCCTCCTTACCTCTCAAAGAACGAAT CAAATCTTGGGGACCTCTTATTGGGCTTTCTTAAATATTATGCTACAGAATTTGACTGGA ACAGTCAGATGATTTCAGTTCGTGAAGCCAAAGCCATTCCCAGGCCTGATGGTATTGAAT GGAGAAATAAATTCATCTGTGTAGAAGAACCTTTTGATGGAACAAATACAGCCAGAGCTG TGCATGAAAAGCAGAAGTTTGATGTGATCAAGGATCAATTTTTAAAGTCATGGCACCGAT TGAAAAACAAACGGGATTTGAACAGTATACTACCTTTAAGAGCTGCTATCCTGAAAAGAT AACTGGCCTCTATTTCTTAATAAAGAACAGTAGTAACATCATAAGGAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 664-764, - strand, RNAz p=0.804046 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 664-764, - strand, RNAz p=0.804046 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 166-292, gnl|bosTau2|chr10 (4357896-4358022) | |
| 166-292, gnl|canFam2|chr3 (30185653-30185500) | |
| 166-292, gnl|danRer3|chr16 (46781894-46782040) | |
| 166-292, gnl|echTel1|scaffold_279494 (38672-38544) | |
| 166-292, gnl|fr1|chrUn (92142828-92142675) | |
| 166-292, gnl|hg17|chr5 (78980623-78980776) | |
| 166-292, gnl|Hg17|chr5 (78980641-78980767) | |
| 166-292, gnl|mm7|chr13 (90230995-90230842) | |
| 166-292, gnl|Mm7|chr13 (90230975-90230849) | |
| 166-292, gnl|monDom2|scaffold_27 (36409360-36409207) | |
| 166-292, gnl|oryCun1|scaffold_114330 (56-209) | |
| 166-292, gnl|panTro1|chr4 (36204825-36204672) | |
| 166-292, gnl|rheMac2|chr6 (75869809-75869962) | |
| 166-292, gnl|rn3|chr2 (23368103-23367950) | |
| 166-292, gnl|tetNig1|chr12 (2935872-2936010) | |
| 166-292, gnl|xenTro1|scaffold_183 (1372481-1372347) | |
| 339-475, gnl|bosTau2|chr10 (4370294-4370430) | |
| 339-475, gnl|Hg17|chr5 (79000471-79000607) | |
| 339-475, gnl|Mm7|chr13 (90217982-90217846) | |
| 646-764, gnl|bosTau2|chr10 (4383571-4383689) | |
| 646-764, gnl|canFam2|chr3 (30157314-30156980) | |
| 646-764, gnl|dasNov1|scaffold_13278 (15450-15812) | |
| 646-764, gnl|echTel1|scaffold_309370 (49305-48950) | |
| 646-764, gnl|galGal2|chrZ (5403773-5403432) | |
| 646-764, gnl|hg17|chr5 (79016717-79017072) | |
| 646-764, gnl|Hg17|chr5 (79016776-79016911) | |
| 646-764, gnl|loxAfr1|scaffold_24508 (38369-38719) | |
| 646-764, gnl|mm7|chr13 (90210649-90210299) | |
| 646-764, gnl|Mm7|chr13 (90210588-90210456) | |
| 646-764, gnl|monDom2|scaffold_27 (36352209-36351818) | |
| 646-764, gnl|oryCun1|scaffold_197680 (11178-10827) | |
| 646-764, gnl|panTro1|chr4 (36168853-36168498) | |
| 646-764, gnl|rheMac2|chr6 (75907330-75907691) | |
| 646-764, gnl|rn3|chr2 (23340451-23340095) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 166-292, gnl|bosTau2|chr10 (4357896-4358022) | |
| 166-292, gnl|canFam2|chr3 (30185653-30185500) | |
| 166-292, gnl|danRer3|chr16 (46781894-46782040) | |
| 166-292, gnl|echTel1|scaffold_279494 (38672-38544) | |
| 166-292, gnl|fr1|chrUn (92142828-92142675) | |
| 166-292, gnl|hg17|chr5 (78980623-78980776) | |
| 166-292, gnl|Hg17|chr5 (78980641-78980767) | |
| 166-292, gnl|mm7|chr13 (90230995-90230842) | |
| 166-292, gnl|Mm7|chr13 (90230975-90230849) | |
| 166-292, gnl|monDom2|scaffold_27 (36409360-36409207) | |
| 166-292, gnl|oryCun1|scaffold_114330 (56-209) | |
| 166-292, gnl|panTro1|chr4 (36204825-36204672) | |
| 166-292, gnl|rheMac2|chr6 (75869809-75869962) | |
| 166-292, gnl|rn3|chr2 (23368103-23367950) | |
| 166-292, gnl|tetNig1|chr12 (2935872-2936010) | |
| 166-292, gnl|xenTro1|scaffold_183 (1372481-1372347) | |
| 339-475, gnl|bosTau2|chr10 (4370294-4370430) | |
| 339-475, gnl|Hg17|chr5 (79000471-79000607) | |
| 339-475, gnl|Mm7|chr13 (90217982-90217846) | |
| 646-764, gnl|bosTau2|chr10 (4383571-4383689) | |
| 646-764, gnl|canFam2|chr3 (30157314-30156980) | |
| 646-764, gnl|dasNov1|scaffold_13278 (15450-15812) | |
| 646-764, gnl|echTel1|scaffold_309370 (49305-48950) | |
| 646-764, gnl|galGal2|chrZ (5403773-5403432) | |
| 646-764, gnl|hg17|chr5 (79016717-79017072) | |
| 646-764, gnl|Hg17|chr5 (79016776-79016911) | |
| 646-764, gnl|loxAfr1|scaffold_24508 (38369-38719) | |
| 646-764, gnl|mm7|chr13 (90210649-90210299) | |
| 646-764, gnl|Mm7|chr13 (90210588-90210456) | |
| 646-764, gnl|monDom2|scaffold_27 (36352209-36351818) | |
| 646-764, gnl|oryCun1|scaffold_197680 (11178-10827) | |
| 646-764, gnl|panTro1|chr4 (36168853-36168498) | |
| 646-764, gnl|rheMac2|chr6 (75907330-75907691) | |
| 646-764, gnl|rn3|chr2 (23340451-23340095) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| gul (0.355177) | |
| lyg (0.266205) | |
| ece (0.229305) | |
| sag (0.182715) | |
| liv (0.146284) | |
| lin (0.145603) | |
| lnt (0.142308) | |
| kid (0.129735) | |
| tra (0.123092) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| gul (0.355177) | |
| lyg (0.266205) | |
| ece (0.229305) | |
| sag (0.182715) | |
| liv (0.146284) | |
| lin (0.145603) | |
| lnt (0.142308) | |
| kid (0.129735) | |
| tra (0.123092) |