Non-Coding RNA Search

Ss1.1-rsag15_a24.5

Sequence:


               
               GAGATGCTCACGCTCTCGAATGCTGCCGTTTGGTATGGTCTCTTCCAACATCCTGTATCA
GCATTGTAAAATAAAATGGATACTTCCAGCTTTGCCTTCACTTATCTCTTTGCTTTTAAA
AACTATTTGTAATGTAATTTTAATGCATTTTTTACAGGCCCAGTAATGGTTAAATACGTC
AGCTTACTGAATCATTTTAACTATTTATTCTTCTAAGGATACAGCTTGTCTCTGGATTTT
CCAGTCTTAATTTTATATTTTATTAATCTATTTTAATGCTTGCTTTTCCCATTTATAGAC
GTTGTAGCAGTAATTGCAAGAAGTTCTTGAGCTGAATTCCTGTTGTGACAACTTCCTATA
TATCTATCATTATAATAGATAACTTTTTCTTTTAGTTGTATGTAACTTTTGTATAACTTG
TGATGGACAGAGATATGCTGATCCAATAAAATAAGTTTAAATATTGCTCTTGGGTCAAAA
TAGCCTTTTACCAAATTGACTGACCTTTTTATGAGTTGTTGGGTGAATCCTTTTTGAAAG
GCTTTTTGTAATTTTAAAGAATCCTTACGAAAGCATATCACATCTTAAACTCATGGTGCA
CATGTGGATTTACAGCTCATGGACTCTACTGTTCAGCTTTAATTTATAAAACATATCACA
CATTTAATATTGTACAGTATTTACATATAGTGGGACATTAGGGGTATCTCAGTTTTATGT
AAATTTTTTTAAGTGTTGTAGCCTACCTGGAGTGACTTCTTTTTTCTTCTTCTTCTTCTT
TGTCTCCAGGTGGTGAAGCAGTATTTTCCAAATTGAAGATTCATTTGAAGGTGGCTCCTG
CCACCTGCTAATAGCAGTTCAAACTAAATTTTTTGTATCAAGTCCCTGAATGGAAGTATG
ACGTTGGGTCCCTCTGAAGTTTAATTCTGAGTTCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGATGCTCACGCTCTCGAATGCTGCCGTTTGGTATGGTCTCTTCCAACATCCTGTATCA
GCATTGTAAAATAAAATGGATACTTCCAGCTTTGCCTTCACTTATCTCTTTGCTTTTAAA
AACTATTTGTAATGTAATTTTAATGCATTTTTTACAGGCCCAGTAATGGTTAAATACGTC
AGCTTACTGAATCATTTTAACTATTTATTCTTCTAAGGATACAGCTTGTCTCTGGATTTT
CCAGTCTTAATTTTATATTTTATTAATCTATTTTAATGCTTGCTTTTCCCATTTATAGAC
GTTGTAGCAGTAATTGCAAGAAGTTCTTGAGCTGAATTCCTGTTGTGACAACTTCCTATA
TATCTATCATTATAATAGATAACTTTTTCTTTTAGTTGTATGTAACTTTTGTATAACTTG
TGATGGACAGAGATATGCTGATCCAATAAAATAAGTTTAAATATTGCTCTTGGGTCAAAA
TAGCCTTTTACCAAATTGACTGACCTTTTTATGAGTTGTTGGGTGAATCCTTTTTGAAAG
GCTTTTTGTAATTTTAAAGAATCCTTACGAAAGCATATCACATCTTAAACTCATGGTGCA
CATGTGGATTTACAGCTCATGGACTCTACTGTTCAGCTTTAATTTATAAAACATATCACA
CATTTAATATTGTACAGTATTTACATATAGTGGGACATTAGGGGTATCTCAGTTTTATGT
AAATTTTTTTAAGTGTTGTAGCCTACCTGGAGTGACTTCTTTTTTCTTCTTCTTCTTCTT
TGTCTCCAGGTGGTGAAGCAGTATTTTCCAAATTGAAGATTCATTTGAAGGTGGCTCCTG
CCACCTGCTAATAGCAGTTCAAACTAAATTTTTTGTATCAAGTCCCTGAATGGAAGTATG
ACGTTGGGTCCCTCTGAAGTTTAATTCTGAGTTCTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               738-897, + strand, RNAz p=0.903492

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               738-897, + strand, RNAz p=0.903492

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               722-854, + strand, RNAmicro p=0.973089

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               722-854, + strand, RNAmicro p=0.973089

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-936, gnl|bosTau2|chr6 (54110959-54111897)
               

               
               1-936, gnl|Hg17|chr4 (83633258-83632340)
               

               
               1-936, gnl|Mm7|chr5 (99176910-99175968)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-936, gnl|bosTau2|chr6 (54110959-54111897)
               

               
               1-936, gnl|Hg17|chr4 (83633258-83632340)
               

               
               1-936, gnl|Mm7|chr5 (99176910-99175968)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               liv (0.292569)
               

               
               cbl (0.229595)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               lyg (0.133103)
               

               
               bla (0.124347)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.292569)
               

               
               cbl (0.229595)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               lyg (0.133103)
               

               
               bla (0.124347)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	1-936, gnl\|bosTau2\|chr6 (54110959-54111897)
	1-936, gnl\|Hg17\|chr4 (83633258-83632340)
	1-936, gnl\|Mm7\|chr5 (99176910-99175968)

	liv (0.292569)
	cbl (0.229595)
	fcc (0.197785)
	sag (0.182715)
	gul (0.177588)
	sin (0.174948)
	lyg (0.133103)
	bla (0.124347)
	jca (0.11396)
	spc (0.113366)
	cty (0.10408)