Non-Coding RNA Search

Ss1.1-rsag15_m15.5

Sequence:


               
               TTTGTGCAAGATTTATGTGAAGATCTTTATGAACTTTTTAAGACTGACAAAAGATTTGAC
AAAGCCACTTTTGAAAGGCAGATGTCTGTGATGCGGGGCCAGATCTTAAATCTCACTCAG
GCGCTGAGGGACAGGAAGAGTCCGGTGCAGCTGGTGCAGATGCCTTGTGTGATCGTCGAG
CGCAGTCAGGGCGGAGGCCAGGGTCGGATTGTCCACCTGAGCAGTTCCTTCACCCAGACC
GTCCACTGCAGGAAGCCATTCTTTTCCTCCTGGTAGCAGACGTCCGAGTAAGAGAAACCA
ACTGTGTGGCATTATTGTGTTATTGGGACATGACAGTACCATAAAGCTGCTGTTGCGAGC
TCCAGTTGCCAAAACCTCAAGTAGTATGTGTCTAAACGGTTAGCTTTTGAATGTAATCGA
AGTTTACAGGTTTTTAGCCAAATATTAAATTTCTTTTTCAGGGAAGAGGTGATGCATCTC
CTCTATCATATTTTTGTAGAAAAATTGTACTTTATGTTGATGTGAGTTGAAGAGGTAATT
TCATAGTTTACACGTTCTGAAATGACTGTAATTACTCGAGAACTCCAGAGCTATGAGGTC
TTTGATGACTTTGAATACAGTAACTTTTTATATGCTTTTTAAACATTGAAAAGAATGCTC
ATGTTAATAACTCTTTTTACATTATAAGAGGCCTTTGAGGATGAAACTGCTCTTTAGGAA
CTTGAATAGAGTAGTAATAGAAAAATAGGTAAGAATAAAGCAAAGTTGCCTTAATTTAAA
AAGCTGCTGTTTTAGAACTTGAGTAAATGCTCCTAAAGTTACCATTATTAGGGACCAGAA
AATAGTATTTTGTTTAAGTTATGGATAACCATTTTCTTTTTCGTACGTCAGAATATTTTT
GGTCAATTATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGTGCAAGATTTATGTGAAGATCTTTATGAACTTTTTAAGACTGACAAAAGATTTGAC
AAAGCCACTTTTGAAAGGCAGATGTCTGTGATGCGGGGCCAGATCTTAAATCTCACTCAG
GCGCTGAGGGACAGGAAGAGTCCGGTGCAGCTGGTGCAGATGCCTTGTGTGATCGTCGAG
CGCAGTCAGGGCGGAGGCCAGGGTCGGATTGTCCACCTGAGCAGTTCCTTCACCCAGACC
GTCCACTGCAGGAAGCCATTCTTTTCCTCCTGGTAGCAGACGTCCGAGTAAGAGAAACCA
ACTGTGTGGCATTATTGTGTTATTGGGACATGACAGTACCATAAAGCTGCTGTTGCGAGC
TCCAGTTGCCAAAACCTCAAGTAGTATGTGTCTAAACGGTTAGCTTTTGAATGTAATCGA
AGTTTACAGGTTTTTAGCCAAATATTAAATTTCTTTTTCAGGGAAGAGGTGATGCATCTC
CTCTATCATATTTTTGTAGAAAAATTGTACTTTATGTTGATGTGAGTTGAAGAGGTAATT
TCATAGTTTACACGTTCTGAAATGACTGTAATTACTCGAGAACTCCAGAGCTATGAGGTC
TTTGATGACTTTGAATACAGTAACTTTTTATATGCTTTTTAAACATTGAAAAGAATGCTC
ATGTTAATAACTCTTTTTACATTATAAGAGGCCTTTGAGGATGAAACTGCTCTTTAGGAA
CTTGAATAGAGTAGTAATAGAAAAATAGGTAAGAATAAAGCAAAGTTGCCTTAATTTAAA
AAGCTGCTGTTTTAGAACTTGAGTAAATGCTCCTAAAGTTACCATTATTAGGGACCAGAA
AATAGTATTTTGTTTAAGTTATGGATAACCATTTTCTTTTTCGTACGTCAGAATATTTTT
GGTCAATTATTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61872902|ref|XP_600059.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61872902|ref|XP_600059.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               100-912, gnl|bosTau2|chr6 (21726028-21725228)
               

               
               100-912, gnl|Hg17|chr4 (24954902-24955683)
               

               
               100-912, gnl|Mm7|chr5 (52140887-52141698)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               100-912, gnl|bosTau2|chr6 (21726028-21725228)
               

               
               100-912, gnl|Hg17|chr4 (24954902-24955683)
               

               
               100-912, gnl|Mm7|chr5 (52140887-52141698)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               cte (0.58548)
               

               
               cbe (0.239234)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               nje (0.16592)
               

               
               csk (0.140746)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)

Expressed library(ies): 8 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.58548)
               

               
               cbe (0.239234)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               nje (0.16592)
               

               
               csk (0.140746)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)

	100-912, gnl\|bosTau2\|chr6 (21726028-21725228)
	100-912, gnl\|Hg17\|chr4 (24954902-24955683)
	100-912, gnl\|Mm7\|chr5 (52140887-52141698)

	cte (0.58548)
	cbe (0.239234)
	nlu (0.191681)
	sag (0.182715)
	nje (0.16592)
	csk (0.140746)
	thg (0.126791)
	pgl (0.118483)