Non-Coding RNA Search

Ss1.1-rsag16_p9.5

Sequence:


               
               GTTTACTTGCACTTCAGTGACACTTAGCTTTATTAAATCAAAAGCTTAGTTATGAAATTG
TGGTGCATATTTCAAGTGGCCTCTCATTTTCCTAAAAGTTCATACTTATTTGCTAAAAGC
CTTACAGCCTTACCTAGCTTTTAATGCATTGCATAAGCACATTTGTAGATTTCAGAAAAA
TTGTCTAGAGTGACCCTACTTTTAATGATGAGAAAAGGATGCTATGTTTAAAACATTTTA
ATACTAAAATAATAGATTTTTAAAAAATAAGAATATGTGGTAATGTATAATTTAATGAGA
TCTTAAGATTTAGTTACTATTTAAATTCACCATTTCTGTTTTGATCTTAAAGGAATACTT
TGGTTTCATTACCCTGAGGGAGCCTTTTTGGTTTGTTGTGTTTTTTTATTAACTTAGATT
TCTGCCTCTGGATATTATTTATAAAGTTTTCTCAGTGAGGATTCTTATGGGTTTCCTTTG
GCCTCTTTTAACAGTGAATTGATGATTTTTTATAAACTTTTCCAGTAAAAGGTGCATTCT
CATTGCTGAATATAAATAGTCCTGGGGAGGTTTATAACCAGGCTGAAAAGAGTGTCTTTC
ACCTCTTACCTTCCCTCAGCCTTTAATTTGTGGGTCAGGGACATACCTTAGGACCATAAA
TTCTTGCTTCGTATTTGTTGCGCTGCCCCTCTTGCCTTTCCATGCAAGCATTTTTAATTT
GCACATTCCTAACAGTTTATGGGGCACATTCCTATTAACATATAAAAATTTTCAGAATTT
CCTATGAAAATAATTTTAGAAGAAGTTGAATGTTTTTTTGTTTTGTTTTTAATATTTCCA
GTTAGCTTCTTATGGTAACAATAAGAATCAAAATTTTGATTCTTTCACTGAGAAATCTTT
CTCGATTGATGTGTAGACAAAATGAGGGAAAACTATCTTATGTGGTGATAAGACATCTTT
AGAGTCATACCTCATTTTAGCAGTTATACCAAGACATGTTTGTCCTGTGTGGGTTTATAT
ATTAACACGTATTTCATACCTGGTGAAATTGCCTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTACTTGCACTTCAGTGACACTTAGCTTTATTAAATCAAAAGCTTAGTTATGAAATTG
TGGTGCATATTTCAAGTGGCCTCTCATTTTCCTAAAAGTTCATACTTATTTGCTAAAAGC
CTTACAGCCTTACCTAGCTTTTAATGCATTGCATAAGCACATTTGTAGATTTCAGAAAAA
TTGTCTAGAGTGACCCTACTTTTAATGATGAGAAAAGGATGCTATGTTTAAAACATTTTA
ATACTAAAATAATAGATTTTTAAAAAATAAGAATATGTGGTAATGTATAATTTAATGAGA
TCTTAAGATTTAGTTACTATTTAAATTCACCATTTCTGTTTTGATCTTAAAGGAATACTT
TGGTTTCATTACCCTGAGGGAGCCTTTTTGGTTTGTTGTGTTTTTTTATTAACTTAGATT
TCTGCCTCTGGATATTATTTATAAAGTTTTCTCAGTGAGGATTCTTATGGGTTTCCTTTG
GCCTCTTTTAACAGTGAATTGATGATTTTTTATAAACTTTTCCAGTAAAAGGTGCATTCT
CATTGCTGAATATAAATAGTCCTGGGGAGGTTTATAACCAGGCTGAAAAGAGTGTCTTTC
ACCTCTTACCTTCCCTCAGCCTTTAATTTGTGGGTCAGGGACATACCTTAGGACCATAAA
TTCTTGCTTCGTATTTGTTGCGCTGCCCCTCTTGCCTTTCCATGCAAGCATTTTTAATTT
GCACATTCCTAACAGTTTATGGGGCACATTCCTATTAACATATAAAAATTTTCAGAATTT
CCTATGAAAATAATTTTAGAAGAAGTTGAATGTTTTTTTGTTTTGTTTTTAATATTTCCA
GTTAGCTTCTTATGGTAACAATAAGAATCAAAATTTTGATTCTTTCACTGAGAAATCTTT
CTCGATTGATGTGTAGACAAAATGAGGGAAAACTATCTTATGTGGTGATAAGACATCTTT
AGAGTCATACCTCATTTTAGCAGTTATACCAAGACATGTTTGTCCTGTGTGGGTTTATAT
ATTAACACGTATTTCATACCTGGTGAAATTGCCTCT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-731, gnl|bosTau2|chr29 (35061987-35062704)
               

               
               1-731, gnl|Hg17|chr11 (63151386-63150666)
               


               
               796-1029, gnl|bosTau2|chr29 (35063182-35063402)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-731, gnl|bosTau2|chr29 (35061987-35062704)
               

               
               1-731, gnl|Hg17|chr11 (63151386-63150666)
               


               
               796-1029, gnl|bosTau2|chr29 (35063182-35063402)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               lnt (0.142308)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               lnt (0.142308)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)

	1-731, gnl\|bosTau2\|chr29 (35061987-35062704)
	1-731, gnl\|Hg17\|chr11 (63151386-63150666)

	796-1029, gnl\|bosTau2\|chr29 (35063182-35063402)

	sag (0.182715)
	mgm (0.180343)
	lnt (0.142308)
	ova (0.129132)
	tra (0.123092)
	cbl (0.114797)
	cty (0.10408)