Non-Coding RNA Search

Ss1.1-rsin05_k20.5

Sequence:


               
               CTTGGGACTTGGGAATTTGTAGAGATAATGTGACCAGGAAGGGGGCATTCATTATGTCCC
CACAGAATGGTTTCTGGGCCATTAGGCTCTATGACGGGGACTACTGGGCCCTCACCTCCC
CAGAAACTTCTCTTCCTCTAAGAGAAAGACCCCTTAAGGTGGGGATATTCCTGGATTATG
AGGCTGGAGATGTATCTTTCTACAACATGACAGAGGGATCCCACATTTTCACCTTTCCCC
AGAACACATTCTATGGTGTCCTGAGACCACTTTTCAGACTTTGGTCCTCTGACTCAGGCT
CCCTAACCATCTGTTCAGCTGAAGGAGAATGTACTGATGTAATTCATAAGCCTACCCTCC
AGGCGAAATGATCACTTTGCCCTAAAGAAGATCGCATTTCTCCCCTAGCAAGACATAAAT
AGATTTTTTCCGAGTCCCTACTGGTTCATTGTCAATATGAAGCTCTGTGACACAGACTTG
ATGATTGTCCCTCATATCAGTTCTTCCTCTTTTTGTCATATATTCCTTCTCATTATTACC
TTTTCCTATGACAACCTCCTATAAGTATTAGATTTCCTAGACTCCCCTGGTGCATGTGAC
TAAAGGATGGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGGGACTTGGGAATTTGTAGAGATAATGTGACCAGGAAGGGGGCATTCATTATGTCCC
CACAGAATGGTTTCTGGGCCATTAGGCTCTATGACGGGGACTACTGGGCCCTCACCTCCC
CAGAAACTTCTCTTCCTCTAAGAGAAAGACCCCTTAAGGTGGGGATATTCCTGGATTATG
AGGCTGGAGATGTATCTTTCTACAACATGACAGAGGGATCCCACATTTTCACCTTTCCCC
AGAACACATTCTATGGTGTCCTGAGACCACTTTTCAGACTTTGGTCCTCTGACTCAGGCT
CCCTAACCATCTGTTCAGCTGAAGGAGAATGTACTGATGTAATTCATAAGCCTACCCTCC
AGGCGAAATGATCACTTTGCCCTAAAGAAGATCGCATTTCTCCCCTAGCAAGACATAAAT
AGATTTTTTCCGAGTCCCTACTGGTTCATTGTCAATATGAAGCTCTGTGACACAGACTTG
ATGATTGTCCCTCATATCAGTTCTTCCTCTTTTTGTCATATATTCCTTCTCATTATTACC
TTTTCCTATGACAACCTCCTATAAGTATTAGATTTCCTAGACTCCCCTGGTGCATGTGAC
TAAAGGATGGTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61883047|ref|XP_588679.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61883047|ref|XP_588679.1|

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               3-313, gnl|bosTau2|chr12 (1728318-1728628)
               

               
               3-313, gnl|Hg17|chr6 (26616908-26617218)
               

               
               3-313, gnl|Mm7|chr13 (22825156-22824846)
               


               
               387-593, gnl|bosTau2|chr23 (20290102-20290306)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-313, gnl|bosTau2|chr12 (1728318-1728628)
               

               
               3-313, gnl|Hg17|chr6 (26616908-26617218)
               

               
               3-313, gnl|Mm7|chr13 (22825156-22824846)
               


               
               387-593, gnl|bosTau2|chr23 (20290102-20290306)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               sin (0.69979)
               

               
               duo (0.172801)
               

               
               jej (0.0989218)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.69979)
               

               
               duo (0.172801)
               

               
               jej (0.0989218)

	3-313, gnl\|bosTau2\|chr12 (1728318-1728628)
	3-313, gnl\|Hg17\|chr6 (26616908-26617218)
	3-313, gnl\|Mm7\|chr13 (22825156-22824846)

	387-593, gnl\|bosTau2\|chr23 (20290102-20290306)