Non-Coding RNA Search

Ss1.1-rsin07_m1.5

Sequence:


               
               TGCGTAGACTGGTTTCTACCTCCTCGCGCTTCTCTCGGCTTCCTTTGCAATCATGTCTGA
CAAACCCGATATGGCTGAGATTGAGAAATTTGATAAGTCGAAATTGAAGAAGACAGAAAC
GCAAGAGAAAAATCCACTGCCTTCAAAAGAAACGATTGAACAGGAGAAGCGAGCAGGCGA
GTCGTAATGAGGCTGTCACCGCCAGTATACTCTGTACATTCCGCAAGCACTGCCTTCTTG
TTTTACTTTTAGCTGTTTACCTTTTTAAGATGCAAAAAGATTGGATCAAGTTTAAATGAT
TGTGCTACCCCTTTTCTCATCAAAAAAAGGAGAACTACTGACACGAAGGCCGCGCCTGCC
TCTTCCATCTACTTGTCTGGGTGCCAGGGAAGGAAAAGAACTTGCATGTTGGTGAAGGAG
GAAACTGGGTGGGAAGAGAGTGAAATCTAGAGAAAGCAAACTGATCCGTGATGTCCTGAG
GGCTGTAAAATGCAGTTTATTCAGAGTGCCATTTTCTTTTAGTTAAAATGATTTTTAAAG
TATGGAATGCACAATTTTTTAATATGCAAATAAAAAATTTTAAAACTTAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCGTAGACTGGTTTCTACCTCCTCGCGCTTCTCTCGGCTTCCTTTGCAATCATGTCTGA
CAAACCCGATATGGCTGAGATTGAGAAATTTGATAAGTCGAAATTGAAGAAGACAGAAAC
GCAAGAGAAAAATCCACTGCCTTCAAAAGAAACGATTGAACAGGAGAAGCGAGCAGGCGA
GTCGTAATGAGGCTGTCACCGCCAGTATACTCTGTACATTCCGCAAGCACTGCCTTCTTG
TTTTACTTTTAGCTGTTTACCTTTTTAAGATGCAAAAAGATTGGATCAAGTTTAAATGAT
TGTGCTACCCCTTTTCTCATCAAAAAAAGGAGAACTACTGACACGAAGGCCGCGCCTGCC
TCTTCCATCTACTTGTCTGGGTGCCAGGGAAGGAAAAGAACTTGCATGTTGGTGAAGGAG
GAAACTGGGTGGGAAGAGAGTGAAATCTAGAGAAAGCAAACTGATCCGTGATGTCCTGAG
GGCTGTAAAATGCAGTTTATTCAGAGTGCCATTTTCTTTTAGTTAAAATGATTTTTAAAG
TATGGAATGCACAATTTTTTAATATGCAAATAAAAAATTTTAAAACTTAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55730680|emb|CAH92061.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55730680|emb|CAH92061.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-599, gnl|bosTau2|chr11 (41567455-41568057)
               

               
               2-599, gnl|Hg17|chr4 (92117423-92116817)
               

               
               2-599, gnl|Mm7|chrX (161982420-161981455)
               


               
               42-598, gnl|bosTau2|chr10 (26212914-26213471)
               

               
               42-598, gnl|Hg17|chr9 (128184054-128184602)
               

               
               42-598, gnl|Mm7|chrX (161982406-161981460)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-599, gnl|bosTau2|chr11 (41567455-41568057)
               

               
               2-599, gnl|Hg17|chr4 (92117423-92116817)
               

               
               2-599, gnl|Mm7|chrX (161982420-161981455)
               


               
               42-598, gnl|bosTau2|chr10 (26212914-26213471)
               

               
               42-598, gnl|Hg17|chr9 (128184054-128184602)
               

               
               42-598, gnl|Mm7|chrX (161982406-161981460)

Expressed library(ies): 41 entry(ies)

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Expressed library(ies): 41 entry(ies)

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               sto (1.97806)
               

               
               cte (1.75644)
               

               
               sin (1.74948)
               

               
               ece (1.14653)
               

               
               sug (1.14562)
               

               
               gul (1.06553)
               

               
               ecc (1.03532)
               

               
               vin (0.997672)
               

               
               cbe (0.956938)
               

               
               lyg (0.931718)
               

               
               thg (0.887536)
               

               
               nco (0.646935)
               

               
               ski (0.586941)
               

               
               pro (0.512033)
               

               
               bla (0.497389)
               

               
               tra (0.492368)
               

               
               spc (0.453463)
               

               
               nms (0.427716)
               

               
               ssp (0.406559)
               

               
               elu (0.385356)
               

               
               ese (0.379507)
               

               
               nep (0.36785)
               

               
               ebs (0.354904)
               

               
               fty (0.351679)
               

               
               jca (0.34188)
               

               
               fco (0.314416)
               

               
               sme (0.305437)
               

               
               bfe (0.299715)
               

               
               fat (0.294855)
               

               
               spl (0.286369)
               

               
               ret (0.257467)
               

               
               hea (0.204499)
               

               
               nbm (0.198649)
               

               
               sag (0.182715)
               

               
               eli (0.151814)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)

Expressed library(ies): 41 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (1.97806)
               

               
               cte (1.75644)
               

               
               sin (1.74948)
               

               
               ece (1.14653)
               

               
               sug (1.14562)
               

               
               gul (1.06553)
               

               
               ecc (1.03532)
               

               
               vin (0.997672)
               

               
               cbe (0.956938)
               

               
               lyg (0.931718)
               

               
               thg (0.887536)
               

               
               nco (0.646935)
               

               
               ski (0.586941)
               

               
               pro (0.512033)
               

               
               bla (0.497389)
               

               
               tra (0.492368)
               

               
               spc (0.453463)
               

               
               nms (0.427716)
               

               
               ssp (0.406559)
               

               
               elu (0.385356)
               

               
               ese (0.379507)
               

               
               nep (0.36785)
               

               
               ebs (0.354904)
               

               
               fty (0.351679)
               

               
               jca (0.34188)
               

               
               fco (0.314416)
               

               
               sme (0.305437)
               

               
               bfe (0.299715)
               

               
               fat (0.294855)
               

               
               spl (0.286369)
               

               
               ret (0.257467)
               

               
               hea (0.204499)
               

               
               nbm (0.198649)
               

               
               sag (0.182715)
               

               
               eli (0.151814)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)

	2-599, gnl\|bosTau2\|chr11 (41567455-41568057)
	2-599, gnl\|Hg17\|chr4 (92117423-92116817)
	2-599, gnl\|Mm7\|chrX (161982420-161981455)

	42-598, gnl\|bosTau2\|chr10 (26212914-26213471)
	42-598, gnl\|Hg17\|chr9 (128184054-128184602)
	42-598, gnl\|Mm7\|chrX (161982406-161981460)

	sto (1.97806)
	cte (1.75644)
	sin (1.74948)
	ece (1.14653)
	sug (1.14562)
	gul (1.06553)
	ecc (1.03532)
	vin (0.997672)
	cbe (0.956938)
	lyg (0.931718)
	thg (0.887536)
	nco (0.646935)
	ski (0.586941)
	pro (0.512033)
	bla (0.497389)
	tra (0.492368)
	spc (0.453463)
	nms (0.427716)
	ssp (0.406559)
	elu (0.385356)
	ese (0.379507)
	nep (0.36785)
	ebs (0.354904)
	fty (0.351679)
	jca (0.34188)
	fco (0.314416)
	sme (0.305437)
	bfe (0.299715)
	fat (0.294855)
	spl (0.286369)
	ret (0.257467)
	hea (0.204499)
	nbm (0.198649)
	sag (0.182715)
	eli (0.151814)
	lin (0.145603)
	pty (0.142714)
	ute (0.132784)
	kid (0.129735)
	eep (0.122564)
	pgl (0.118483)