Non-Coding RNA Search

Ss1.1-rsin07_m18.5

Sequence:


               
               AAAAAATCAGTGATCTGCTATTAACTTATGTATTTGAGGCCAGTGTCATACAGTCATCTG
TACATATCAGAGCTGCAGAAGGAAGTCCACTCAGCCGGATGTCTAGGAAAAGGCAGACTA
AGAAACAGAAGTCCCGTGATGTCTGATGCAAGTTTGTCTCAGGTAGATTCAGCATGTCAG
TGTTGTTTGTGATCCTTGAATGTTATTTTAAGAGTTGTGGTCGCCCTGGTTCCGGCCACT
TTCCCTATAAAACCTCACCTCTCATAATTTTTCAAAAGAAAAAATCCCCCCCCTCCCGAT
ATCATGTCAAGTTTTTCCCGGCACAAGAGTAATCAATTTGATAAGTTGATGAACACATTG
AAGCTGAGGATGGAAGTTTGATGGAGTCCCCATCCTGGGTCTTTGCTCTCCAAAGGAGAG
GTCTGGGATGGTAATACTTACCCCCAAAGAGAGGGACCCAGGTGCCAATCTCAGGCCACT
AGGGAAATCAGGTAATCTTGAGTCAAGGCGATTTTCTGCATTTCTTAGAAGTGTCCATTG
TGAGTTCCTTGGGTTGAGATTTCATTCATTTTGGCATATCTTTTGCCTGTACTGTCTTAG
TCACTCAGCAATGTCTGTGGACCAAATGAATGATATGAACATTTGTTTATAAATGTTTGC
TTTATTTTTGGTTAACTTTTTCTTATGGCTGCACAAAGTACACACTCTCGTGACTATAAT
GAATTGGGGTGCATTTCCAGAGGCCTGTCTTCCTCATGGTGCCAATGCTGGCATACAGGT
CTAGAAGCTGACTCTCTCACATAATAGAGCAAATGCACCTCTTGGAGGCAGCCGTCATCT
CAAAGTAACCACACTCTCCTGAAACACTGAAACTTTTTGGCCTGAGACCCTCCTTCTATG
CGCTCACATGACCATAGCTCATATTTTTTTGAGGTGTCTTGATTGATGATCATCCACTGA
CCAAGGTTAGAGTGGGTGGTCTCTGTTCCAGGTGGTAGCACTTGACACTCTTATTTCTTG
TTTCCTAGGGAGAATTTTTAAAAATTAAATTTAATTAATTTAATTCTTTTAATTCCACCA
GTGAAATATTAATTATAATATAATCCTGTGGAAGTCATGGTGTTGGTATTGACTGGTTTC
AAGCTAGCTTGGAAAAGAGAAGTGATCTGAGATTCTGTGGAGCTAAGAGCGGTTCCTTGG
GTATAAAAGTGGCTTAACAGGTATACAATGGCTTGTTCTTGTATAAGGAAAAGAAAATTT
TGATATGCCCTTATATTCCCCTTAAAGCTCAGGCAGAGAAGATGGAAAAGTGGAGAATTT
CACATTATTCAGAGTACTTGTGGGAGTTTGTGATGTTTTTGAGCTTTGAGAGGATAAAGA
GGGATTATAGAAAGTTGGGGAATGGAACAGGCATAAAGTATCTAGATTGTCCTAGATTCT
GTTTCCGACTTTGCCAATGATTCACTGTGTATATTGCAGTAAATTATTTTGTCTCAACTG
TGTATTTTCCTCTTTGAAAAATGGAGACCTTGGTGCTTATAGCATCTACCTACCTCCTCT
GGGTGTGACAAGGTCATTTTGAAAAGGGTTAGGATATACATACATGAAAGATGCCAAGCA
AATGTTATATTAAGCTTCATTAATGTAGTCCCATACATTAAATTTTACTACTTTGGTAAA
AATAAAAGACATTAAAAATGAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAATCAGTGATCTGCTATTAACTTATGTATTTGAGGCCAGTGTCATACAGTCATCTG
TACATATCAGAGCTGCAGAAGGAAGTCCACTCAGCCGGATGTCTAGGAAAAGGCAGACTA
AGAAACAGAAGTCCCGTGATGTCTGATGCAAGTTTGTCTCAGGTAGATTCAGCATGTCAG
TGTTGTTTGTGATCCTTGAATGTTATTTTAAGAGTTGTGGTCGCCCTGGTTCCGGCCACT
TTCCCTATAAAACCTCACCTCTCATAATTTTTCAAAAGAAAAAATCCCCCCCCTCCCGAT
ATCATGTCAAGTTTTTCCCGGCACAAGAGTAATCAATTTGATAAGTTGATGAACACATTG
AAGCTGAGGATGGAAGTTTGATGGAGTCCCCATCCTGGGTCTTTGCTCTCCAAAGGAGAG
GTCTGGGATGGTAATACTTACCCCCAAAGAGAGGGACCCAGGTGCCAATCTCAGGCCACT
AGGGAAATCAGGTAATCTTGAGTCAAGGCGATTTTCTGCATTTCTTAGAAGTGTCCATTG
TGAGTTCCTTGGGTTGAGATTTCATTCATTTTGGCATATCTTTTGCCTGTACTGTCTTAG
TCACTCAGCAATGTCTGTGGACCAAATGAATGATATGAACATTTGTTTATAAATGTTTGC
TTTATTTTTGGTTAACTTTTTCTTATGGCTGCACAAAGTACACACTCTCGTGACTATAAT
GAATTGGGGTGCATTTCCAGAGGCCTGTCTTCCTCATGGTGCCAATGCTGGCATACAGGT
CTAGAAGCTGACTCTCTCACATAATAGAGCAAATGCACCTCTTGGAGGCAGCCGTCATCT
CAAAGTAACCACACTCTCCTGAAACACTGAAACTTTTTGGCCTGAGACCCTCCTTCTATG
CGCTCACATGACCATAGCTCATATTTTTTTGAGGTGTCTTGATTGATGATCATCCACTGA
CCAAGGTTAGAGTGGGTGGTCTCTGTTCCAGGTGGTAGCACTTGACACTCTTATTTCTTG
TTTCCTAGGGAGAATTTTTAAAAATTAAATTTAATTAATTTAATTCTTTTAATTCCACCA
GTGAAATATTAATTATAATATAATCCTGTGGAAGTCATGGTGTTGGTATTGACTGGTTTC
AAGCTAGCTTGGAAAAGAGAAGTGATCTGAGATTCTGTGGAGCTAAGAGCGGTTCCTTGG
GTATAAAAGTGGCTTAACAGGTATACAATGGCTTGTTCTTGTATAAGGAAAAGAAAATTT
TGATATGCCCTTATATTCCCCTTAAAGCTCAGGCAGAGAAGATGGAAAAGTGGAGAATTT
CACATTATTCAGAGTACTTGTGGGAGTTTGTGATGTTTTTGAGCTTTGAGAGGATAAAGA
GGGATTATAGAAAGTTGGGGAATGGAACAGGCATAAAGTATCTAGATTGTCCTAGATTCT
GTTTCCGACTTTGCCAATGATTCACTGTGTATATTGCAGTAAATTATTTTGTCTCAACTG
TGTATTTTCCTCTTTGAAAAATGGAGACCTTGGTGCTTATAGCATCTACCTACCTCCTCT
GGGTGTGACAAGGTCATTTTGAAAAGGGTTAGGATATACATACATGAAAGATGCCAAGCA
AATGTTATATTAAGCTTCATTAATGTAGTCCCATACATTAAATTTTACTACTTTGGTAAA
AATAAAAGACATTAAAAATGAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               553-671, + strand, RNAz p=0.746168

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               553-671, + strand, RNAz p=0.746168

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-671, gnl|bosTau2|chr17 (43521606-43522276)
               

               
               2-671, gnl|Hg17|chr22 (30830903-30831582)
               

               
               2-671, gnl|Mm7|chr5 (32223896-32224518)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-671, gnl|bosTau2|chr17 (43521606-43522276)
               

               
               2-671, gnl|Hg17|chr22 (30830903-30831582)
               

               
               2-671, gnl|Mm7|chr5 (32223896-32224518)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               sin (2.62421)
               

               
               jej (1.68167)
               

               
               tra (0.492368)
               

               
               duo (0.345602)
               

               
               pty (0.285429)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               pgl (0.118483)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (2.62421)
               

               
               jej (1.68167)
               

               
               tra (0.492368)
               

               
               duo (0.345602)
               

               
               pty (0.285429)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               pgl (0.118483)

	2-671, gnl\|bosTau2\|chr17 (43521606-43522276)
	2-671, gnl\|Hg17\|chr22 (30830903-30831582)
	2-671, gnl\|Mm7\|chr5 (32223896-32224518)

	sin (2.62421)
	jej (1.68167)
	tra (0.492368)
	duo (0.345602)
	pty (0.285429)
	sag (0.182715)
	gul (0.177588)
	ill (0.175593)
	rec (0.17307)
	pgl (0.118483)