Non-Coding RNA Search

Ss1.1-rsin08_c18.5

Sequence:


               
               GTTTTGTTTCATTTGTGGACAAAGACTTAGATACAAGTGCAAAAAATAAATCCTCTTTGG
CGAGGGAGAACTCATTGTTCAGTATGAGTTTTGATACAGATAAGAAGGAACATGAAGGCT
AGAGCAGATTTAAGTGGTTGCAGGGAGAGGGGAGGGGTGCAGAGGGTATTGATAAACATA
AAGGCTTGCCTTCTACGGCTACAGAATTGAAAATATTAAAGCTTAAGATAGAAGAGAAAT
TATCAACATTGTTAGGTTAGCACTATAGTTTTGATGTTGCTCTTGTTGACATGAAACAAA
GATGGCTTCTTGTTTTTAGGCTTTTATCTTGAACACAAGTGAATGGACTATGGGTATGTC
TTGTGCTTCAGGTATTGGCATATCCCAAGGATCTGTACTGTTGTAGGGTGTGATAGTTTA
GGGTGTCTAAAATTCACAACCAGGCAGATACATCTCTTCTGACCCTAAACATGACCCTAC
CTAAAGTGAGCTGGTTGAGTAAATTGTATCCCAAAAGTTATAGGTGGGGGAATTTTGAAG
TGAGTCCATTATTTCATTGATACTTGCAAAGCTGAACTAAACAACTGTGGCAAGACTGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTGTTTCATTTGTGGACAAAGACTTAGATACAAGTGCAAAAAATAAATCCTCTTTGG
CGAGGGAGAACTCATTGTTCAGTATGAGTTTTGATACAGATAAGAAGGAACATGAAGGCT
AGAGCAGATTTAAGTGGTTGCAGGGAGAGGGGAGGGGTGCAGAGGGTATTGATAAACATA
AAGGCTTGCCTTCTACGGCTACAGAATTGAAAATATTAAAGCTTAAGATAGAAGAGAAAT
TATCAACATTGTTAGGTTAGCACTATAGTTTTGATGTTGCTCTTGTTGACATGAAACAAA
GATGGCTTCTTGTTTTTAGGCTTTTATCTTGAACACAAGTGAATGGACTATGGGTATGTC
TTGTGCTTCAGGTATTGGCATATCCCAAGGATCTGTACTGTTGTAGGGTGTGATAGTTTA
GGGTGTCTAAAATTCACAACCAGGCAGATACATCTCTTCTGACCCTAAACATGACCCTAC
CTAAAGTGAGCTGGTTGAGTAAATTGTATCCCAAAAGTTATAGGTGGGGGAATTTTGAAG
TGAGTCCATTATTTCATTGATACTTGCAAAGCTGAACTAAACAACTGTGGCAAGACTGAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               2-115, + strand, RNAz p=0.828278

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-115, + strand, RNAz p=0.828278

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK128061, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK128061, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-115, gnl|bosTau2|chr29 (551507-551395)
               

               
               2-115, gnl|Hg17|chr11 (93108035-93107921)
               

               
               2-115, gnl|Mm7|chr9 (15151171-15151281)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-115, gnl|bosTau2|chr29 (551507-551395)
               

               
               2-115, gnl|Hg17|chr11 (93108035-93107921)
               

               
               2-115, gnl|Mm7|chr9 (15151171-15151281)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               sin (0.174948)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)

	2-115, gnl\|bosTau2\|chr29 (551507-551395)
	2-115, gnl\|Hg17\|chr11 (93108035-93107921)
	2-115, gnl\|Mm7\|chr9 (15151171-15151281)