Non-Coding RNA Search

Ss1.1-rsin09_c14.5

Sequence:


               
               CGCAGATGCAGCTCGGATCCCAAGTTGCTGTGGCTGTGGTGTAGGCCGGTGGCTACAGCT
CCAATTCATCCCCTAGCCTGGGAGCTTCCATGTGCTGCAGGTGCAGCCCTAAAAATTCAA
AAAAGACAAAAGTATATGTGGAGATTATTAGTAGACTGGAGAAATAATAAATTCAAAAAT
ATTTACTCAAAAAAATATTATAACCCTAAATCAGGGTTTCATATCTCTTTCTAGGGAGAG
GGAGAGAAAAAAAATACATGTGCATACATGCACATGCATACACTTATATAATTTTAAATT
CGATTGGTACTTCAGTTATAGTGCAGTTGTTTTTAAATTTAAATTCTTTTCTTCTACCCA
GCAGCTATTTTTATTCAAATGGGAATTCAGTACTAGAGAATAAATGTCTATATGTAGTCT
TAATGAATTGATATAAATAAGGGATACAACATTAAATTGACCACCAAATTTGTCATTTGA
CTGAATTGTTACTACAGATGAAACTTGTATTATTTTTGCTGTTTGTATATTGTCTTCTGT
AGAGTTGCATATATACAGGTTATTCAGCAAAGTTCAGGTCTCAGAGAATTGCTTTTGCTC
AGTAAATTTAGGCCCTGCTACTTTCCACCTTTTTGTTCAGTAAAACTTATGATATGAAAA
AGGCAAAGATATATGTTGAATAAAGCTATATAGGATTTTAACTTCAGTCTCCCAACTTAG
TCTTTCTAACATGACTATCTAATTTGAAGTGATTGCCCTGTGCTGCTCCAGCCCTTGTGC
ATCCTGAGCTTTGTGTGATCTGCCTCAAGGCTATGTGCTGTTTTGTATCCAATCAGAAAG
ATGTTTTGGCTATGTCTAAAGCACAGGACCAATTTCAGATTCCTCAAGGAGGCAGCTATA
GAAAGTCTAGGCAGCCTTTTCAATACCAAGCACATCCCTACTGGTCGAGAACCACATGAG
GAGATCTAATGGGAACTTATCAGCAAATGGAATCACAGCAGTCCTCGAAAGTGAGTGATT
CTGAAAAGGTACTTTCCTGGAATAATTGTCTACCTGAAGAAAAAATTATATATGTACATT
TACATGCATATATATTTGTATTCCTATACTAGGAGATTGTCATTGTGTAAATCAGGAACA
ACCTTCTCTTTATTGACAATCTCATAATAAAACTCAGGAACCAGGACAAAAAGGAATTGG
TTTCAAGGGATCTGAACCATACTGCCCGTACAGGTGTTGATTCATTTTAATGTTTTTATG
ATTTCTGCATTGGCAGAAAATTTCACACTTCCTGTTTCTTAATGACTCAATTTATCACCG
AAAATAGCACGTTTGAGTATATTTAGGAAATAGAAAAAGTAGAAATTGCTATTTGTGCAT
TGAATAAGCAAGAAATAGCATCCCAATTATTTCCTTGATTGATGAGGTTAAATATTTGTG
GTTTTTGAGTAGCTGTGTTTCCCCTTTAATCAAATGTTATGTCCTTTGCCCTTGTAACAC
CTATTGGAGTTACTTTCTTTTTCATATCAAGTAACAGGATCTCTTTATATAATAAATGTA
ATCTAATGGCAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCAGATGCAGCTCGGATCCCAAGTTGCTGTGGCTGTGGTGTAGGCCGGTGGCTACAGCT
CCAATTCATCCCCTAGCCTGGGAGCTTCCATGTGCTGCAGGTGCAGCCCTAAAAATTCAA
AAAAGACAAAAGTATATGTGGAGATTATTAGTAGACTGGAGAAATAATAAATTCAAAAAT
ATTTACTCAAAAAAATATTATAACCCTAAATCAGGGTTTCATATCTCTTTCTAGGGAGAG
GGAGAGAAAAAAAATACATGTGCATACATGCACATGCATACACTTATATAATTTTAAATT
CGATTGGTACTTCAGTTATAGTGCAGTTGTTTTTAAATTTAAATTCTTTTCTTCTACCCA
GCAGCTATTTTTATTCAAATGGGAATTCAGTACTAGAGAATAAATGTCTATATGTAGTCT
TAATGAATTGATATAAATAAGGGATACAACATTAAATTGACCACCAAATTTGTCATTTGA
CTGAATTGTTACTACAGATGAAACTTGTATTATTTTTGCTGTTTGTATATTGTCTTCTGT
AGAGTTGCATATATACAGGTTATTCAGCAAAGTTCAGGTCTCAGAGAATTGCTTTTGCTC
AGTAAATTTAGGCCCTGCTACTTTCCACCTTTTTGTTCAGTAAAACTTATGATATGAAAA
AGGCAAAGATATATGTTGAATAAAGCTATATAGGATTTTAACTTCAGTCTCCCAACTTAG
TCTTTCTAACATGACTATCTAATTTGAAGTGATTGCCCTGTGCTGCTCCAGCCCTTGTGC
ATCCTGAGCTTTGTGTGATCTGCCTCAAGGCTATGTGCTGTTTTGTATCCAATCAGAAAG
ATGTTTTGGCTATGTCTAAAGCACAGGACCAATTTCAGATTCCTCAAGGAGGCAGCTATA
GAAAGTCTAGGCAGCCTTTTCAATACCAAGCACATCCCTACTGGTCGAGAACCACATGAG
GAGATCTAATGGGAACTTATCAGCAAATGGAATCACAGCAGTCCTCGAAAGTGAGTGATT
CTGAAAAGGTACTTTCCTGGAATAATTGTCTACCTGAAGAAAAAATTATATATGTACATT
TACATGCATATATATTTGTATTCCTATACTAGGAGATTGTCATTGTGTAAATCAGGAACA
ACCTTCTCTTTATTGACAATCTCATAATAAAACTCAGGAACCAGGACAAAAAGGAATTGG
TTTCAAGGGATCTGAACCATACTGCCCGTACAGGTGTTGATTCATTTTAATGTTTTTATG
ATTTCTGCATTGGCAGAAAATTTCACACTTCCTGTTTCTTAATGACTCAATTTATCACCG
AAAATAGCACGTTTGAGTATATTTAGGAAATAGAAAAAGTAGAAATTGCTATTTGTGCAT
TGAATAAGCAAGAAATAGCATCCCAATTATTTCCTTGATTGATGAGGTTAAATATTTGTG
GTTTTTGAGTAGCTGTGTTTCCCCTTTAATCAAATGTTATGTCCTTTGCCCTTGTAACAC
CTATTGGAGTTACTTTCTTTTTCATATCAAGTAACAGGATCTCTTTATATAATAAATGTA
ATCTAATGGCAAAAAAAAAAAAAA

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               178-820, gnl|bosTau2|chr8 (12528808-12529446)
               

               
               178-820, gnl|Hg17|chr9 (21322514-21321846)
               

               
               178-820, gnl|Mm7|chr4 (88123398-88122772)
               


               
               1418-1580, gnl|bosTau2|chr4 (53612295-53612132)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               178-820, gnl|bosTau2|chr8 (12528808-12529446)
               

               
               178-820, gnl|Hg17|chr9 (21322514-21321846)
               

               
               178-820, gnl|Mm7|chr4 (88123398-88122772)
               


               
               1418-1580, gnl|bosTau2|chr4 (53612295-53612132)

Expressed library(ies): 22 entry(ies)

More info

Expressed library(ies): 22 entry(ies)

Help | Less info


               
               fat (0.442282)
               

               
               liv (0.438853)
               

               
               ebs (0.236602)
               

               
               pan (0.23596)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               cje (0.165235)
               

               
               mga (0.160205)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.442282)
               

               
               liv (0.438853)
               

               
               ebs (0.236602)
               

               
               pan (0.23596)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               cje (0.165235)
               

               
               mga (0.160205)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	178-820, gnl\|bosTau2\|chr8 (12528808-12529446)
	178-820, gnl\|Hg17\|chr9 (21322514-21321846)
	178-820, gnl\|Mm7\|chr4 (88123398-88122772)

	1418-1580, gnl\|bosTau2\|chr4 (53612295-53612132)

	fat (0.442282)
	liv (0.438853)
	ebs (0.236602)
	pan (0.23596)
	sag (0.182715)
	gul (0.177588)
	fty (0.17584)
	sin (0.174948)
	rec (0.17307)
	cje (0.165235)
	mga (0.160205)
	lin (0.145603)
	lnt (0.142308)
	lyg (0.133103)
	kid (0.129735)
	ret (0.128733)
	sug (0.127291)
	ese (0.126502)
	cbl (0.114797)
	jca (0.11396)
	spc (0.113366)
	eje (0.0988338)