Non-Coding RNA Search

Ss1.1-rsin09_o8.5

Sequence:


               
               GACTACACTGGCTCTGTGCCTTGTGTAAAGATAGTGTTCAGTAAATACTTTTCAATTGAT
TTGATGAAGTATGTCATTCCAGAACCAATCAAGTGTTCTTCATAAATTCAAGGGAATCCT
CTTTTCTACTATGTCTTCAGAAGAACTTCTAAATTCCCTGGATTCTTTTGATGCAAGAGA
AGATGATGTGTTTCTGGTTTCCTATCCAAAATCTGGCACTCACTGGATTGCAGAAGTTAT
TGAGAACATTCCCAATGCTAGGATTACCCTAACACCTCCTATTGAACTGGGAGACATCTC
CAAATTGGAAGAGCTAAAAACATACAGTGAGAGGAGAGTTATTCCAACACACTTGAGCTA
TGACATGCTACCGATGAATATCAAACAGAAACAGTGCAAGATTATCTACATCATTAGGAA
TCCAAAAGATACAGCTGTTTCACTCTTCCACTACTACAGAGATAACCCTAATCTCCCCAG
CATTGAAACCTGGCATGAATTTCTTGAGCTGTTCCTCAGAGGAGACGTTGTGTATGGATC
CTGGTTTGATCACATTTTAAGTTGGGAGGAACACAAAAATGCGAAGAACATTCTAATTAT
ATTCTATGAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACTACACTGGCTCTGTGCCTTGTGTAAAGATAGTGTTCAGTAAATACTTTTCAATTGAT
TTGATGAAGTATGTCATTCCAGAACCAATCAAGTGTTCTTCATAAATTCAAGGGAATCCT
CTTTTCTACTATGTCTTCAGAAGAACTTCTAAATTCCCTGGATTCTTTTGATGCAAGAGA
AGATGATGTGTTTCTGGTTTCCTATCCAAAATCTGGCACTCACTGGATTGCAGAAGTTAT
TGAGAACATTCCCAATGCTAGGATTACCCTAACACCTCCTATTGAACTGGGAGACATCTC
CAAATTGGAAGAGCTAAAAACATACAGTGAGAGGAGAGTTATTCCAACACACTTGAGCTA
TGACATGCTACCGATGAATATCAAACAGAAACAGTGCAAGATTATCTACATCATTAGGAA
TCCAAAAGATACAGCTGTTTCACTCTTCCACTACTACAGAGATAACCCTAATCTCCCCAG
CATTGAAACCTGGCATGAATTTCTTGAGCTGTTCCTCAGAGGAGACGTTGTGTATGGATC
CTGGTTTGATCACATTTTAAGTTGGGAGGAACACAAAAATGCGAAGAACATTCTAATTAT
ATTCTATGAAGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|51712848|ref|XP_284251.3|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51712848|ref|XP_284251.3|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-216, gnl|bosTau2|chr5 (56963667-56963882)
               

               
               1-216, gnl|Hg17|chr12 (22179238-22179009)
               

               
               1-216, gnl|Mm7|chr6 (142895922-142895708)
               


               
               399-535, gnl|bosTau2|chr5 (56971523-56971659)
               

               
               399-535, gnl|Hg17|chr12 (22170958-22170822)
               

               
               399-535, gnl|Mm7|chr6 (142889433-142889297)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-216, gnl|bosTau2|chr5 (56963667-56963882)
               

               
               1-216, gnl|Hg17|chr12 (22179238-22179009)
               

               
               1-216, gnl|Mm7|chr6 (142895922-142895708)
               


               
               399-535, gnl|bosTau2|chr5 (56971523-56971659)
               

               
               399-535, gnl|Hg17|chr12 (22170958-22170822)
               

               
               399-535, gnl|Mm7|chr6 (142889433-142889297)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               sin (0.349895)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.349895)

	1-216, gnl\|bosTau2\|chr5 (56963667-56963882)
	1-216, gnl\|Hg17\|chr12 (22179238-22179009)
	1-216, gnl\|Mm7\|chr6 (142895922-142895708)

	399-535, gnl\|bosTau2\|chr5 (56971523-56971659)
	399-535, gnl\|Hg17\|chr12 (22170958-22170822)
	399-535, gnl\|Mm7\|chr6 (142889433-142889297)