Non-Coding RNA Search

Ss1.1-rsin10_b2.5

Sequence:


               
               AAAAAGAGTAGTCTGTTTGACTTCAGAAAATTAACCTTGGCTATATGGCTGTTTTTTAAT
GCATAGTATTGCTTTGAAATTTTTTAAAAAATGGAATTTTCTTATGATAATATTTTAAAA
TAACTCTAAGTAAACTTTTGTTATGGACCATTATTAGCTTAGCTGGAAACTGACATATCT
CTTTAAATGACCTTTTAAAGGTGAAAAGCTATGCACAGCCTAAGGGAGCTTGTCAGGAAA
TTTTATAATTCAGGAGCTGTTAGCCAAACTTGTCCTTTAATATACCAGAGAAGAAAGTTA
TAAATGTCTTTGAGGTTATTCTCCTTTCTATGTGTTGTTATACAAAGACTCACATATTTG
CAGTACAGCTTCTATTAAGACAGCTTTAAAAATTTGTTTTCCTGCTTTAGCCAATGTAAT
GTTGATATCATTAACCCCTAAGTGTTATTTTCTTAAGAGAAACTACTTTTCTGGCCTGTT
TAAAAGCCTTTGGAAGCACAGCTCTTTTATGACAAAATAATTTGTATTCTTATTCATATA
CATATATTTGACAGTACATGTTTAATATCTGAAAAGATACATACAAAAAATAAAACCTTC
ACTAATCCTATCTTTGATCATTAAAATACCTCTGTTTGTAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAGAGTAGTCTGTTTGACTTCAGAAAATTAACCTTGGCTATATGGCTGTTTTTTAAT
GCATAGTATTGCTTTGAAATTTTTTAAAAAATGGAATTTTCTTATGATAATATTTTAAAA
TAACTCTAAGTAAACTTTTGTTATGGACCATTATTAGCTTAGCTGGAAACTGACATATCT
CTTTAAATGACCTTTTAAAGGTGAAAAGCTATGCACAGCCTAAGGGAGCTTGTCAGGAAA
TTTTATAATTCAGGAGCTGTTAGCCAAACTTGTCCTTTAATATACCAGAGAAGAAAGTTA
TAAATGTCTTTGAGGTTATTCTCCTTTCTATGTGTTGTTATACAAAGACTCACATATTTG
CAGTACAGCTTCTATTAAGACAGCTTTAAAAATTTGTTTTCCTGCTTTAGCCAATGTAAT
GTTGATATCATTAACCCCTAAGTGTTATTTTCTTAAGAGAAACTACTTTTCTGGCCTGTT
TAAAAGCCTTTGGAAGCACAGCTCTTTTATGACAAAATAATTTGTATTCTTATTCATATA
CATATATTTGACAGTACATGTTTAATATCTGAAAAGATACATACAAAAAATAAAACCTTC
ACTAATCCTATCTTTGATCATTAAAATACCTCTGTTTGTAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-642, gnl|bosTau2|chr4 (5682740-5682104)
               

               
               3-642, gnl|Hg17|chr7 (12465646-12466551)
               

               
               3-642, gnl|Mm7|chr12 (37893784-37893100)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-642, gnl|bosTau2|chr4 (5682740-5682104)
               

               
               3-642, gnl|Hg17|chr7 (12465646-12466551)
               

               
               3-642, gnl|Mm7|chr12 (37893784-37893100)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               sin (0.524843)
               

               
               kid (0.129735)
               

               
               pgl (0.118483)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.524843)
               

               
               kid (0.129735)
               

               
               pgl (0.118483)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	3-642, gnl\|bosTau2\|chr4 (5682740-5682104)
	3-642, gnl\|Hg17\|chr7 (12465646-12466551)
	3-642, gnl\|Mm7\|chr12 (37893784-37893100)

	sin (0.524843)
	kid (0.129735)
	pgl (0.118483)
	nbm (0.0993246)
	jej (0.0989218)
	eje (0.0988338)