Non-Coding RNA Search

Ss1.1-rsin11_i3.5

Sequence:


               
               GAAAAGTCTCAGCTCCCTTCTTTGGTCTTCCACCTGGTTCGCCACCTGCTGACTCGATGT
GTATTATAGCTGTTGACAATGACTGGGGCCTGACCCCAGCATCTCTTGTCCCTTGGTCCA
GCCCAGCCAGGCAGGCAGAATGCAGAGAGCAGTATTACTGTAAGAAAACACAACGACATA
ACCAAGCGTTGGGTCGGGCGGGGGGCCGGGAGGGTGTTGATTTTCGTCTCTTTGTGGTTC
TGTTTGGGATTGGTAGGTTTTGTGGTGGTGTGGTTTTGCCCTTGTTATTTTACTTCAATT
CTGGAAAATACTGAAGAGGTGGAATGAGCTGCAAAGTTCATGGGCACCCACTTGACCGTG
TTCACAAGAAATGATGGAACACAGATGACACTGCTGTCAGTGTTGTCACTTGTAAAAATC
TTTAACTGATGGAGACTTGGAGGGACTGTGTATGCAGAAGTTGTTGCAAAAGTACTTTAT
GTACCTATTGTGTAGATGCCTGTACAGCTGGTCCACTTGTACAGCAATTCATGTGTTGTG
GGAGCCAGAAAGAGTGTGTACAGTTGGCTGTACCTTTTTCTTTCAGTTCTTAGCATCAGT
TAATGAGTAAGATATTGGAGATTTTAATGAAAAGCTGCTGTTCATGATTCTTGCGTCTAG
AGAGCTGACTGTGGTATTTTACTATTGTCTGTTTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAAGTCTCAGCTCCCTTCTTTGGTCTTCCACCTGGTTCGCCACCTGCTGACTCGATGT
GTATTATAGCTGTTGACAATGACTGGGGCCTGACCCCAGCATCTCTTGTCCCTTGGTCCA
GCCCAGCCAGGCAGGCAGAATGCAGAGAGCAGTATTACTGTAAGAAAACACAACGACATA
ACCAAGCGTTGGGTCGGGCGGGGGGCCGGGAGGGTGTTGATTTTCGTCTCTTTGTGGTTC
TGTTTGGGATTGGTAGGTTTTGTGGTGGTGTGGTTTTGCCCTTGTTATTTTACTTCAATT
CTGGAAAATACTGAAGAGGTGGAATGAGCTGCAAAGTTCATGGGCACCCACTTGACCGTG
TTCACAAGAAATGATGGAACACAGATGACACTGCTGTCAGTGTTGTCACTTGTAAAAATC
TTTAACTGATGGAGACTTGGAGGGACTGTGTATGCAGAAGTTGTTGCAAAAGTACTTTAT
GTACCTATTGTGTAGATGCCTGTACAGCTGGTCCACTTGTACAGCAATTCATGTGTTGTG
GGAGCCAGAAAGAGTGTGTACAGTTGGCTGTACCTTTTTCTTTCAGTTCTTAGCATCAGT
TAATGAGTAAGATATTGGAGATTTTAATGAAAAGCTGCTGTTCATGATTCTTGCGTCTAG
AGAGCTGACTGTGGTATTTTACTATTGTCTGTTTAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               38-152, - strand, RNAz p=0.691397
               

               
               493-605, - strand, RNAz p=0.617456

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               38-152, - strand, RNAz p=0.691397
               

               
               493-605, - strand, RNAz p=0.617456

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-696, gnl|bosTau2|chr23 (30117097-30117763)
               

               
               1-696, gnl|Hg17|chr6 (17868285-17867576)
               

               
               1-696, gnl|Mm7|chr13 (46231969-46231287)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-696, gnl|bosTau2|chr23 (30117097-30117763)
               

               
               1-696, gnl|Hg17|chr6 (17868285-17867576)
               

               
               1-696, gnl|Mm7|chr13 (46231969-46231287)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               sin (0.174948)
               

               
               csk (0.140746)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)
               

               
               csk (0.140746)

	38-152, - strand, RNAz p=0.691397
	493-605, - strand, RNAz p=0.617456

	1-696, gnl\|bosTau2\|chr23 (30117097-30117763)
	1-696, gnl\|Hg17\|chr6 (17868285-17867576)
	1-696, gnl\|Mm7\|chr13 (46231969-46231287)