Non-Coding RNA Search

Ss1.1-rsin12_a6.5

Sequence:


               
               GTTGTTTCAGCAGCTCCTCCTTCTTCTTGCCCCGAAGGTCTCGAGCCTTAATCTTGGCCA
TGGCTGTGCAAGCTGCCGCTCGAGCAAGGGGCCATGGCGGCTGTGGTGTCTCTTTGCAGC
CGGTTGGGGAGGAGAAAGTCGACAGACTTCGTGAATGCTGCTGTCTGCCTTACGGATCCC
GGGACTCATGCAGTGCTGTGGAGAAGTTGTTCACAATATAAACAGGTAGCCAGCAACGAG
GACCTTCCTGTTCCAATGGAAAATCCTTATAAGGAGCCTCTGAAAAAATGTATCTTGTGT
GAAAAACATGTAGATTATAAGAATGTGCAGCTTTTATCCCAGTTTATTTCTCCTTTTACT
GGATGCATTTATGGAAGGCACATAACAGGTCTTTGTGGGAAGAAACAAAAAGAAATTACA
AAAGCAATTAAGAGAGCTCAAATACTGGGGTTTATGCCAGTTACATACAAGGATCCTGCA
TATCTCAAAGACCCTAAAGTTTGTAACATCAAATACAGGGAGTAAATTATATAAAGTTAT
CAATAAACTTAGCAATATTTGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGTTTCAGCAGCTCCTCCTTCTTCTTGCCCCGAAGGTCTCGAGCCTTAATCTTGGCCA
TGGCTGTGCAAGCTGCCGCTCGAGCAAGGGGCCATGGCGGCTGTGGTGTCTCTTTGCAGC
CGGTTGGGGAGGAGAAAGTCGACAGACTTCGTGAATGCTGCTGTCTGCCTTACGGATCCC
GGGACTCATGCAGTGCTGTGGAGAAGTTGTTCACAATATAAACAGGTAGCCAGCAACGAG
GACCTTCCTGTTCCAATGGAAAATCCTTATAAGGAGCCTCTGAAAAAATGTATCTTGTGT
GAAAAACATGTAGATTATAAGAATGTGCAGCTTTTATCCCAGTTTATTTCTCCTTTTACT
GGATGCATTTATGGAAGGCACATAACAGGTCTTTGTGGGAAGAAACAAAAAGAAATTACA
AAAGCAATTAAGAGAGCTCAAATACTGGGGTTTATGCCAGTTACATACAAGGATCCTGCA
TATCTCAAAGACCCTAAAGTTTGTAACATCAAATACAGGGAGTAAATTATATAAAGTTAT
CAATAAACTTAGCAATATTTGTGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57109098|ref|XP_535635.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57109098|ref|XP_535635.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               82-542, gnl|bosTau2|chr12 (37780230-37780690)
               

               
               82-542, gnl|Hg17|chrX (53735417-53735845)
               

               
               82-542, gnl|Mm7|chr17 (11799350-11798887)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               82-542, gnl|bosTau2|chr12 (37780230-37780690)
               

               
               82-542, gnl|Hg17|chrX (53735417-53735845)
               

               
               82-542, gnl|Mm7|chr17 (11799350-11798887)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               sme (0.610874)
               

               
               che (0.545256)
               

               
               cbl (0.45919)
               

               
               cmu (0.372787)
               

               
               cbe (0.239234)
               

               
               fli (0.202881)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.610874)
               

               
               che (0.545256)
               

               
               cbl (0.45919)
               

               
               cmu (0.372787)
               

               
               cbe (0.239234)
               

               
               fli (0.202881)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

	82-542, gnl\|bosTau2\|chr12 (37780230-37780690)
	82-542, gnl\|Hg17\|chrX (53735417-53735845)
	82-542, gnl\|Mm7\|chr17 (11799350-11798887)

	sme (0.610874)
	che (0.545256)
	cbl (0.45919)
	cmu (0.372787)
	cbe (0.239234)
	fli (0.202881)
	ton (0.1755)
	sin (0.174948)
	cki (0.165235)
	csp (0.161186)
	thg (0.126791)
	tra (0.123092)
	ebs (0.118301)
	ecc (0.115035)
	jej (0.0989218)