Ss1.1-rsin12_i11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCGAATTGGCTGTAGGACCATAGTCTACTGGGGGATTGGTAGGAATCGTTACCAGTTGGA AATTCCAGAGAATTTCACCACCCGTAATTTGCCAGAAGAATATGAGTTGAAATCCACCAA GAAGGGCTGTAAACGATACTGGACCAAAACAATTGAGAAGAAGTTGGCTAATCTGATAAA TGCTGAAGAACGGAGAGATGTTTCACTGAAGGACTGCATGCGACGACTATTTTATAACTT TGATAAAAATTACAAGGACTGGCAGGCTGCTGTAGAGTGCATCGCAGTGTTGGATGTCTT ATTGTGCCTGGCTAACTACAGTCGAGGGGGTGATGGTCCTATGTGTCGTCCAGTAATTCT GTTGCCAGGAGAAGACACTCCTCCCTTTCTGTACCTTAAAGGATCACGCCATCCCTGCAT TACAAAGACTTTTTTTGGTGATGACTTTATTCCTAATGACATTCTCATAGGCTGTGAGGA AGAAGAGGAGGAAAATGACAAAGCTTATTGTGTGCTTGTTACTGGGCCAAATATGGGGGG CAAGTCTACACTTATGAGACAGGCTGGCCTATTAGCTGTAATGGCCCAGATGGGTTGTTA TGTACCAGCTGAAGTGTGCAGGCTCACACCAATTGATAGAGTGTTTACTAGACTTGGTGC CTCAGACAGAATAATGTCAGGTGAAAGTACATTTTTTGTTGAATTGAGTGAAACTGCCAG TATTCTTACACATGCAACAGCACATTCTCTGGTGCTTGTGGATGAATTAGGAAGAGGTAC TGCAACATTTGATGGGACAGCAATAGCAAATGCTGTTGTTAAAGAACTGGCTGAGAATAT AAAGTGTCGTACGTTGTTTTCTACCCACTACCATTCATTAGTTGAAGACTATTCTCAAAA TGTTGCAGTGCGCCTGGGACACATGGCATGCATGGTAGAAAATGAATGCGAGGATCCCAG CCAGGAGACTATTACCTTCCTCTATAAATTCATTAAAGGAGCTTGTCCTAAAAGCTATGG CTTTAATGCAGCAAGGCTTGCTAATCTTCCAGAGGAGGTTATTCAAAAGGGACATAGAAA AGCAAGAGAATTCGAGAAGATGACTCAGTCATTACGATTATTTCGGGAAGTTTGTCTGGC TAGTGAAAGGTCGACTGTAGATGCTGAAGCTGTCCATAAGTTGCTGACTTTGATGGAGGA ATTATAGGCTACGTTGGAAGCTTTAAGTTCACTTTTGACAAAGGTGGTAAATTCAGACAA TACATTATGATCTAATAAACTTTATTTTTTAAAAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCGAATTGGCTGTAGGACCATAGTCTACTGGGGGATTGGTAGGAATCGTTACCAGTTGGA AATTCCAGAGAATTTCACCACCCGTAATTTGCCAGAAGAATATGAGTTGAAATCCACCAA GAAGGGCTGTAAACGATACTGGACCAAAACAATTGAGAAGAAGTTGGCTAATCTGATAAA TGCTGAAGAACGGAGAGATGTTTCACTGAAGGACTGCATGCGACGACTATTTTATAACTT TGATAAAAATTACAAGGACTGGCAGGCTGCTGTAGAGTGCATCGCAGTGTTGGATGTCTT ATTGTGCCTGGCTAACTACAGTCGAGGGGGTGATGGTCCTATGTGTCGTCCAGTAATTCT GTTGCCAGGAGAAGACACTCCTCCCTTTCTGTACCTTAAAGGATCACGCCATCCCTGCAT TACAAAGACTTTTTTTGGTGATGACTTTATTCCTAATGACATTCTCATAGGCTGTGAGGA AGAAGAGGAGGAAAATGACAAAGCTTATTGTGTGCTTGTTACTGGGCCAAATATGGGGGG CAAGTCTACACTTATGAGACAGGCTGGCCTATTAGCTGTAATGGCCCAGATGGGTTGTTA TGTACCAGCTGAAGTGTGCAGGCTCACACCAATTGATAGAGTGTTTACTAGACTTGGTGC CTCAGACAGAATAATGTCAGGTGAAAGTACATTTTTTGTTGAATTGAGTGAAACTGCCAG TATTCTTACACATGCAACAGCACATTCTCTGGTGCTTGTGGATGAATTAGGAAGAGGTAC TGCAACATTTGATGGGACAGCAATAGCAAATGCTGTTGTTAAAGAACTGGCTGAGAATAT AAAGTGTCGTACGTTGTTTTCTACCCACTACCATTCATTAGTTGAAGACTATTCTCAAAA TGTTGCAGTGCGCCTGGGACACATGGCATGCATGGTAGAAAATGAATGCGAGGATCCCAG CCAGGAGACTATTACCTTCCTCTATAAATTCATTAAAGGAGCTTGTCCTAAAAGCTATGG CTTTAATGCAGCAAGGCTTGCTAATCTTCCAGAGGAGGTTATTCAAAAGGGACATAGAAA AGCAAGAGAATTCGAGAAGATGACTCAGTCATTACGATTATTTCGGGAAGTTTGTCTGGC TAGTGAAAGGTCGACTGTAGATGCTGAAGCTGTCCATAAGTTGCTGACTTTGATGGAGGA ATTATAGGCTACGTTGGAAGCTTTAAGTTCACTTTTGACAAAGGTGGTAAATTCAGACAA TACATTATGATCTAATAAACTTTATTTTTTAAAAAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 559-684, + strand, RNAz p=0.858517 | |
| 567-684, + strand, RNAz p=0.908039 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 559-684, + strand, RNAz p=0.858517 | |
| 567-684, + strand, RNAz p=0.908039 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 1-293, gnl|bosTau2|chr11 (19642514-19642222) | |
| 1-293, gnl|Hg17|chr2 (47939653-47939945) | |
| 1-293, gnl|Mm7|chr17 (86289131-86289423) | |
| 559-684, gnl|bosTau2|chr11 (19639983-19639858) | |
| 559-684, gnl|canFam2|chr10 (52961379-52961476) | |
| 559-684, gnl|danRer3|chr13 (46412302-46412392) | |
| 559-684, gnl|echTel1|scaffold_313052 (77929-77832) | |
| 559-684, gnl|fr1|chrUn (25120866-25120772) | |
| 559-684, gnl|galGal2|chr3 (8402134-8402040) | |
| 559-684, gnl|hg17|chr2 (47943691-47943788) | |
| 559-684, gnl|Hg17|chr2 (47943696-47943821) | |
| 559-684, gnl|loxAfr1|scaffold_30408 (20097-20003) | |
| 559-684, gnl|mm7|chr17 (86291577-86291674) | |
| 559-684, gnl|Mm7|chr17 (86291582-86291707) | |
| 559-684, gnl|monDom2|scaffold_1 (7973276-7973367) | |
| 559-684, gnl|panTro1|chr12 (50001352-50001449) | |
| 559-684, gnl|rheMac2|chr13 (47957180-47957277) | |
| 559-684, gnl|rn3|chr6 (11541035-11541129) | |
| 559-684, gnl|tetNig1|chr17 (3354238-3354335) | |
| 559-684, gnl|xenTro1|scaffold_111 (360444-360540) | |
| 925-1142, gnl|bosTau2|chr11 (19638914-19638697) | |
| 925-1142, gnl|canFam2|chr10 (52962685-52962901) | |
| 925-1142, gnl|danRer3|chr13 (46414681-46414894) | |
| 925-1142, gnl|dasNov1|scaffold_26506 (1211-1014) | |
| 925-1142, gnl|echTel1|scaffold_313052 (76792-76573) | |
| 925-1142, gnl|fr1|chrUn (25120282-25120069) | |
| 925-1142, gnl|galGal2|chr3 (8399698-8399448) | |
| 925-1142, gnl|hg17|chr2 (47945229-47945446) | |
| 925-1142, gnl|Hg17|chr2 (47945241-47945467) | |
| 925-1142, gnl|loxAfr1|scaffold_30408 (18338-18118) | |
| 925-1142, gnl|mm7|chr17 (86292859-86293077) | |
| 925-1142, gnl|Mm7|chr17 (86292872-86293089) | |
| 925-1142, gnl|monDom2|scaffold_1 (7973957-7974163) | |
| 925-1142, gnl|oryCun1|scaffold_158318 (4002-4201) | |
| 925-1142, gnl|panTro1|chr12 (50002861-50003078) | |
| 925-1142, gnl|rheMac2|chr13 (47958676-47958890) | |
| 925-1142, gnl|rn3|chr6 (11542087-11542305) | |
| 925-1142, gnl|tetNig1|chr17 (3354858-3355053) | |
| 925-1142, gnl|xenTro1|scaffold_111 (363136-363359) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-293, gnl|bosTau2|chr11 (19642514-19642222) | |
| 1-293, gnl|Hg17|chr2 (47939653-47939945) | |
| 1-293, gnl|Mm7|chr17 (86289131-86289423) | |
| 559-684, gnl|bosTau2|chr11 (19639983-19639858) | |
| 559-684, gnl|canFam2|chr10 (52961379-52961476) | |
| 559-684, gnl|danRer3|chr13 (46412302-46412392) | |
| 559-684, gnl|echTel1|scaffold_313052 (77929-77832) | |
| 559-684, gnl|fr1|chrUn (25120866-25120772) | |
| 559-684, gnl|galGal2|chr3 (8402134-8402040) | |
| 559-684, gnl|hg17|chr2 (47943691-47943788) | |
| 559-684, gnl|Hg17|chr2 (47943696-47943821) | |
| 559-684, gnl|loxAfr1|scaffold_30408 (20097-20003) | |
| 559-684, gnl|mm7|chr17 (86291577-86291674) | |
| 559-684, gnl|Mm7|chr17 (86291582-86291707) | |
| 559-684, gnl|monDom2|scaffold_1 (7973276-7973367) | |
| 559-684, gnl|panTro1|chr12 (50001352-50001449) | |
| 559-684, gnl|rheMac2|chr13 (47957180-47957277) | |
| 559-684, gnl|rn3|chr6 (11541035-11541129) | |
| 559-684, gnl|tetNig1|chr17 (3354238-3354335) | |
| 559-684, gnl|xenTro1|scaffold_111 (360444-360540) | |
| 925-1142, gnl|bosTau2|chr11 (19638914-19638697) | |
| 925-1142, gnl|canFam2|chr10 (52962685-52962901) | |
| 925-1142, gnl|danRer3|chr13 (46414681-46414894) | |
| 925-1142, gnl|dasNov1|scaffold_26506 (1211-1014) | |
| 925-1142, gnl|echTel1|scaffold_313052 (76792-76573) | |
| 925-1142, gnl|fr1|chrUn (25120282-25120069) | |
| 925-1142, gnl|galGal2|chr3 (8399698-8399448) | |
| 925-1142, gnl|hg17|chr2 (47945229-47945446) | |
| 925-1142, gnl|Hg17|chr2 (47945241-47945467) | |
| 925-1142, gnl|loxAfr1|scaffold_30408 (18338-18118) | |
| 925-1142, gnl|mm7|chr17 (86292859-86293077) | |
| 925-1142, gnl|Mm7|chr17 (86292872-86293089) | |
| 925-1142, gnl|monDom2|scaffold_1 (7973957-7974163) | |
| 925-1142, gnl|oryCun1|scaffold_158318 (4002-4201) | |
| 925-1142, gnl|panTro1|chr12 (50002861-50003078) | |
| 925-1142, gnl|rheMac2|chr13 (47958676-47958890) | |
| 925-1142, gnl|rn3|chr6 (11542087-11542305) | |
| 925-1142, gnl|tetNig1|chr17 (3354858-3355053) | |
| 925-1142, gnl|xenTro1|scaffold_111 (363136-363359) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| gul (0.532765) | |
| cbe (0.239234) | |
| mgp (0.230681) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| cmu (0.186393) | |
| sin (0.174948) | |
| duo (0.172801) | |
| fat (0.147427) | |
| ova (0.129132) | |
| ret (0.128733) | |
| ese (0.126502) | |
| bla (0.124347) | |
| med (0.116252) | |
| spc (0.113366) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| gul (0.532765) | |
| cbe (0.239234) | |
| mgp (0.230681) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| cmu (0.186393) | |
| sin (0.174948) | |
| duo (0.172801) | |
| fat (0.147427) | |
| ova (0.129132) | |
| ret (0.128733) | |
| ese (0.126502) | |
| bla (0.124347) | |
| med (0.116252) | |
| spc (0.113366) | |
| cty (0.10408) | |
| eje (0.0988338) |