Non-Coding RNA Search

Ss1.1-rsin14_d2.5

Sequence:


               
               GGATGAGATTGCTAGGAGGAAGGCTCAATTCAAGAAAGCCTGGAGGGATGCTCCATTATA
TCCTGATTGGAGGAAAGAAGAATTCAAAGCTGCAAATGTGACCCTGGATGAAGCCACTGC
CCACCCTGCCCTCCTCGTGTCTGAAAGAGGGAGGCGGGTTACCTGGCAAGAAACTTGTCA
AGATCTTCCCAGCTCCACACAGAGATTCAACTCCATTCCCTGTGTGCTGGGTCAGCTGCG
CATCAACTCAGGGAGGGCCTGCTGGGAGGTGGAGGTTGGGGACATGCAATCTTGGGACTT
GGGAATTTGTAGAGATAATGTGACCAGAGAGGGGGTATTCACTATGTCCCCACAGAATGG
TTTCTGGGCCATTAGGCTCTATGACGGGGACTACTGGGCCCTCACCTCCCCGGAAACTTC
TCTTCCTCTAAGAGAAAGACCCCTTAAGGTAGGAATATTCCTGGATTATGAGGCTGGAGA
TGTATCTTTCTACAACATGACGGATGGATCCCACATTTTCACCTTTCCCCAGAACACATT
CTATGGTGTCCTAAGACCACTTTTCAGACTTTGGTCCTCTGACTCGGGCTCCCTAACCAT
CTGTTCAGCTGAAGGAGAATGTACTGATGTTGTAATTCATATGCCTACCCTCCAGGTGAA
ATGATCACTTTGCCCCATAGAAGATGGCATTTCTCCCCCAGCAAGATATATAAATAGATT
TTTTCCTAGTCCCTACTGGTTCATTGTCAATATGAAGCTCTGTGACACAGACTTGATGAT
TGTCCCTCATATCAGTTCTTCCTCTTTTTGTCATTTATTCCTTCTCATTATTACCTTTTC
CTATGACAACCTCCTATAAGTATTAGATTTCCTAGACCCCCCTGGTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATGAGATTGCTAGGAGGAAGGCTCAATTCAAGAAAGCCTGGAGGGATGCTCCATTATA
TCCTGATTGGAGGAAAGAAGAATTCAAAGCTGCAAATGTGACCCTGGATGAAGCCACTGC
CCACCCTGCCCTCCTCGTGTCTGAAAGAGGGAGGCGGGTTACCTGGCAAGAAACTTGTCA
AGATCTTCCCAGCTCCACACAGAGATTCAACTCCATTCCCTGTGTGCTGGGTCAGCTGCG
CATCAACTCAGGGAGGGCCTGCTGGGAGGTGGAGGTTGGGGACATGCAATCTTGGGACTT
GGGAATTTGTAGAGATAATGTGACCAGAGAGGGGGTATTCACTATGTCCCCACAGAATGG
TTTCTGGGCCATTAGGCTCTATGACGGGGACTACTGGGCCCTCACCTCCCCGGAAACTTC
TCTTCCTCTAAGAGAAAGACCCCTTAAGGTAGGAATATTCCTGGATTATGAGGCTGGAGA
TGTATCTTTCTACAACATGACGGATGGATCCCACATTTTCACCTTTCCCCAGAACACATT
CTATGGTGTCCTAAGACCACTTTTCAGACTTTGGTCCTCTGACTCGGGCTCCCTAACCAT
CTGTTCAGCTGAAGGAGAATGTACTGATGTTGTAATTCATATGCCTACCCTCCAGGTGAA
ATGATCACTTTGCCCCATAGAAGATGGCATTTCTCCCCCAGCAAGATATATAAATAGATT
TTTTCCTAGTCCCTACTGGTTCATTGTCAATATGAAGCTCTGTGACACAGACTTGATGAT
TGTCCCTCATATCAGTTCTTCCTCTTTTTGTCATTTATTCCTTCTCATTATTACCTTTTC
CTATGACAACCTCCTATAAGTATTAGATTTCCTAGACCCCCCTGGTGC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61878099|ref|XP_591862.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61878099|ref|XP_591862.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               408-527, + strand, RNAz p=0.869704

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               408-527, + strand, RNAz p=0.869704

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               89-651, gnl|bosTau2|chr23 (20289535-20290096)
               

               
               89-651, gnl|Hg17|chr6 (26500578-26501072)
               

               
               89-651, gnl|Mm7|chr13 (22844834-22844318)
               


               
               96-603, gnl|bosTau2|chr12 (1728121-1728628)
               

               
               96-603, gnl|Hg17|chr6 (26616711-26617218)
               

               
               96-603, gnl|Mm7|chr13 (22825353-22824846)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               89-651, gnl|bosTau2|chr23 (20289535-20290096)
               

               
               89-651, gnl|Hg17|chr6 (26500578-26501072)
               

               
               89-651, gnl|Mm7|chr13 (22844834-22844318)
               


               
               96-603, gnl|bosTau2|chr12 (1728121-1728628)
               

               
               96-603, gnl|Hg17|chr6 (26616711-26617218)
               

               
               96-603, gnl|Mm7|chr13 (22825353-22824846)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ill (0.526778)
               

               
               sin (0.349895)
               

               
               jej (0.296765)
               

               
               nco (0.161734)
               

               
               eje (0.0988338)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.526778)
               

               
               sin (0.349895)
               

               
               jej (0.296765)
               

               
               nco (0.161734)
               

               
               eje (0.0988338)

	89-651, gnl\|bosTau2\|chr23 (20289535-20290096)
	89-651, gnl\|Hg17\|chr6 (26500578-26501072)
	89-651, gnl\|Mm7\|chr13 (22844834-22844318)

	96-603, gnl\|bosTau2\|chr12 (1728121-1728628)
	96-603, gnl\|Hg17\|chr6 (26616711-26617218)
	96-603, gnl\|Mm7\|chr13 (22825353-22824846)

	ill (0.526778)
	sin (0.349895)
	jej (0.296765)
	nco (0.161734)
	eje (0.0988338)