Non-Coding RNA Search

Ss1.1-rsin14_m23.5

Sequence:


               
               TGCTGCCAGCCTCACTCAACTTTCAGTTGGCTCTGTGTCAGTTTTCTACTCAGACAGTGT
TAACTACTTGTTACTGCCATGCTACTTGCCTTCCCTTGAAGACTTTATAAGCTCATCACA
GCTTAGAGTTCAGTAAAGTCAATTCACACAGAAGCACAATTTTGCCCTTTTCCAGACACT
GTTGCCTCTATCTAGTCATATAAATAGGATTTTGCATACTTTCTGTTTGCCCCTGTATTT
GTCAGTGCATCAGAAATACATCTAAACAGTGGTAAAATGCACATATTACTTTTAAATCAT
TAGGACATCCCCACCTGTTCCTGATGAATAAAGTGTGTTAAAGACCAAAATTATTGACAT
AATAATCAGTTACATTACAAATCACGTATAGTTTAATCTTTATTTTTTTTAATTAAGAAA
TCATGTTTAAAATGGCAAAAGCCCATGTTATACATAGACTCTTTTATATAGCTGCAAAAA
AATTTATATCTGTACAGATCTAACATAACACTACTACACTCAGTATTCATTTTATTGAAG
CATGCAAGTAAAGCACTTTTTCTAATTTATATAGATACCTAATTAACAAGGCACATTGTA
CTAATGACTAGGAAAAGTAGTTCTTTTTTCCCTCCCTCTGACGATGAATTCTTGTCATAA
TATCCTTTTTCCAGTAAAATTTTGAGAGGCAGTTGGCAATTTAGGAGGCAGCAGGGTCTA
TTTTGGTAAAATCCTGAATTGTTGCACTCTTGTGACTGATCTTTCTTTGGGAATGTCTTT
TATTTGCATAGGGCTCTTAGAGATGTGTGCAGACTTGCTTATTATGTGGTTAGTGCGTGT
TAGGAGCATACAAGCATGTGTTCTGAACCAGCTGAGATTAGCCACAGTGAGCAACTTGGT
GGCTAGCTGAAGAGAAAGAACAGTTGATTCATACCCAGCTGTTGGTACCTTGGGGGATGA
ACCAAATAGCAGGCAGATGTTGGTTCGTTGCCTTCTTCCTCTTTCCTCCTAAAATATTGG
CTTTACCATCTTAACTCTGCTGTGTTTTTTTTTCCTTTGCATGAAATATCATCTTTGTTT
TTAGCGCCTCCTTCTTCCCCCAACAGAACAAAAACAAAAAACAAGGCCTCCAGAGATCTC
ATTAAGATTTTCTGTCCTGATTTTTTTTGAGCAAAATCTGGAAAATGTGAAAGCGTATTT
AGATTTTATATACTCTCTGAAATGTGATTTGTTAAGATTCTTAAATTTGGTCCTCTTGTA
ATATTTTAAATGAGATCTACCAACTCATGATGAGACTGTTTTTTGCAGATATCTTTAGGC
CTTTATTAGAAAGCTGTTTTCCCCCTGTTGGTACATTCGGTTACCTCATTTTGCTGTTTG
TTTCAGATTATGAAAGCTTACAGGGGTGTATTTTGGAATTGTTTGCTGAGTCATTTCCTC
AAATCATATTCCATTGTATCAGTTAACATATAGTTTTAAATGTACGTATTATAAATATCT
GTAACCAAATCATTTGAAGGCTTGATAAATTTTTAACAAAGTTTGTACATTTTTTATGAA
AGTTACTAGTAATGCTTTACTAAGTAGTGCAATGAATTTTTATTTTTAATCCCTGTGCCC
AATTTTGGAGTTGAGAGGGTTGTTGGTAATAAATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTGCCAGCCTCACTCAACTTTCAGTTGGCTCTGTGTCAGTTTTCTACTCAGACAGTGT
TAACTACTTGTTACTGCCATGCTACTTGCCTTCCCTTGAAGACTTTATAAGCTCATCACA
GCTTAGAGTTCAGTAAAGTCAATTCACACAGAAGCACAATTTTGCCCTTTTCCAGACACT
GTTGCCTCTATCTAGTCATATAAATAGGATTTTGCATACTTTCTGTTTGCCCCTGTATTT
GTCAGTGCATCAGAAATACATCTAAACAGTGGTAAAATGCACATATTACTTTTAAATCAT
TAGGACATCCCCACCTGTTCCTGATGAATAAAGTGTGTTAAAGACCAAAATTATTGACAT
AATAATCAGTTACATTACAAATCACGTATAGTTTAATCTTTATTTTTTTTAATTAAGAAA
TCATGTTTAAAATGGCAAAAGCCCATGTTATACATAGACTCTTTTATATAGCTGCAAAAA
AATTTATATCTGTACAGATCTAACATAACACTACTACACTCAGTATTCATTTTATTGAAG
CATGCAAGTAAAGCACTTTTTCTAATTTATATAGATACCTAATTAACAAGGCACATTGTA
CTAATGACTAGGAAAAGTAGTTCTTTTTTCCCTCCCTCTGACGATGAATTCTTGTCATAA
TATCCTTTTTCCAGTAAAATTTTGAGAGGCAGTTGGCAATTTAGGAGGCAGCAGGGTCTA
TTTTGGTAAAATCCTGAATTGTTGCACTCTTGTGACTGATCTTTCTTTGGGAATGTCTTT
TATTTGCATAGGGCTCTTAGAGATGTGTGCAGACTTGCTTATTATGTGGTTAGTGCGTGT
TAGGAGCATACAAGCATGTGTTCTGAACCAGCTGAGATTAGCCACAGTGAGCAACTTGGT
GGCTAGCTGAAGAGAAAGAACAGTTGATTCATACCCAGCTGTTGGTACCTTGGGGGATGA
ACCAAATAGCAGGCAGATGTTGGTTCGTTGCCTTCTTCCTCTTTCCTCCTAAAATATTGG
CTTTACCATCTTAACTCTGCTGTGTTTTTTTTTCCTTTGCATGAAATATCATCTTTGTTT
TTAGCGCCTCCTTCTTCCCCCAACAGAACAAAAACAAAAAACAAGGCCTCCAGAGATCTC
ATTAAGATTTTCTGTCCTGATTTTTTTTGAGCAAAATCTGGAAAATGTGAAAGCGTATTT
AGATTTTATATACTCTCTGAAATGTGATTTGTTAAGATTCTTAAATTTGGTCCTCTTGTA
ATATTTTAAATGAGATCTACCAACTCATGATGAGACTGTTTTTTGCAGATATCTTTAGGC
CTTTATTAGAAAGCTGTTTTCCCCCTGTTGGTACATTCGGTTACCTCATTTTGCTGTTTG
TTTCAGATTATGAAAGCTTACAGGGGTGTATTTTGGAATTGTTTGCTGAGTCATTTCCTC
AAATCATATTCCATTGTATCAGTTAACATATAGTTTTAAATGTACGTATTATAAATATCT
GTAACCAAATCATTTGAAGGCTTGATAAATTTTTAACAAAGTTTGTACATTTTTTATGAA
AGTTACTAGTAATGCTTTACTAAGTAGTGCAATGAATTTTTATTTTTAATCCCTGTGCCC
AATTTTGGAGTTGAGAGGGTTGTTGGTAATAAATGT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               87-348, - strand, RNAz p=0.869234
               

               
               778-895, - strand, RNAz p=0.922163

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               87-348, - strand, RNAz p=0.869234
               

               
               778-895, - strand, RNAz p=0.922163

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               852-931, + strand, RNAmicro p=0.968332

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               852-931, + strand, RNAmicro p=0.968332

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               15-1656, gnl|bosTau2|chr14 (5055415-5057067)
               

               
               15-1656, gnl|Hg17|chr9 (36328056-36326414)
               

               
               15-1656, gnl|Mm7|chr4 (44141704-44140046)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-1656, gnl|bosTau2|chr14 (5055415-5057067)
               

               
               15-1656, gnl|Hg17|chr9 (36328056-36326414)
               

               
               15-1656, gnl|Mm7|chr4 (44141704-44140046)

Expressed library(ies): 19 entry(ies)

More info

Expressed library(ies): 19 entry(ies)

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               liv (0.585137)
               

               
               amn (0.417711)
               

               
               sin (0.349895)
               

               
               rec (0.346141)
               

               
               fat (0.294855)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               ecc (0.23007)
               

               
               nje (0.16592)
               

               
               lun (0.150489)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.585137)
               

               
               amn (0.417711)
               

               
               sin (0.349895)
               

               
               rec (0.346141)
               

               
               fat (0.294855)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               ecc (0.23007)
               

               
               nje (0.16592)
               

               
               lun (0.150489)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	87-348, - strand, RNAz p=0.869234
	778-895, - strand, RNAz p=0.922163

	15-1656, gnl\|bosTau2\|chr14 (5055415-5057067)
	15-1656, gnl\|Hg17\|chr9 (36328056-36326414)
	15-1656, gnl\|Mm7\|chr4 (44141704-44140046)

	liv (0.585137)
	amn (0.417711)
	sin (0.349895)
	rec (0.346141)
	fat (0.294855)
	ova (0.258264)
	sug (0.254582)
	ecc (0.23007)
	nje (0.16592)
	lun (0.150489)
	lin (0.145603)
	spl (0.143184)
	kid (0.129735)
	bla (0.124347)
	tra (0.123092)
	clu (0.119646)
	ebs (0.118301)
	cty (0.10408)
	eje (0.0988338)