Non-Coding RNA Search

Ss1.1-rsin14_o1.5

Sequence:


               
               TGTATTTTTCTGTTTTGCTTTTATTTTGACGTGCTGGTAGCACATCCTTGATGAATGTCA
ACTTAAAAACTCAGTTCAGGTATCCAGGTATAACTCAGCCAAACCGATTTTAAAGCTGCA
TATAACTCTCCAGCACACGGTGCCTCACACTCTTATAGTGGCATTCTATATATTCAGTTA
TTACTACTGAGCAGATAATATGGGGGTTCCTGTTAACAGTGTATTTAAAAGGACAAAATG
TGCATAAATGTATAGCCAGCACATGCAGTGCATACATATACACACACACAGGTAAACTAT
ATATTTTTATGCCACTAATAGCCAGCACAATTAAACAACATTCCTTACTGTTTCTGTTAA
CTATAACAGATGCAGTTCTTCCTCAATGTGGCTCTTGCTTCTTCACCATACTACTACTAA
ATTCAAGCACTGGTCCTTGGGTGTCTGACCTCTACATTCTAGTTTATGCAATGTCTTTAG
AGAATTCTGTGCACTGGCCACTGTGATGGAACCATTGGGCCAGGAGTGCTCTGAGTTTAT
TAGTAGTGATTCTGCCAAAGTTGGTGTTGTAACATAAGTATGTAAATGTCAAAAAGTTAG
CAGAGGCCTAGGATTACGTATCAGCAAACAATTTTGTCAGTGTGTTTTATAGCCTGGAAG
TCCTCAGTGACAAGTTCTTCTGATGTGAAGTTCTAAATCCAGTGTTTTAGCCCTTTGCAT
CTTTAATGTTAAGACTTGTCTGCTAGAGGTCTTCATTCTTTAAAACATCTTTTGTTTTCT
GCAGTACTGTCTGTGGTTAACAAAATAGATGATTCCTCTGCTTTAATATTTGATATCTTA
CATCTAAAAGGAATTCTCCCTATATAAAAACCCATAGCCTTTGAAGATATGGAAAATGGC
ATCTTTCAGATTTCTAGAAGTTCAAGTGTCATGCAACAAAACAGGAACCCCCTTTACTCT
TATGGACCTCATTTCAATATACTGTTTACAGTTTGACGGAATTGTATAATTTAATATTTC
TCTTGTACTGTAGTTTATATTTATTTACAGATTTTTTTTTGTACTGTGTGATTTGAACTT
TTTTGTTCCTTGCTATGATCAATGTTTATGTAGTAGAGCACTTATGATCACAGATTAAGT
TTTTTGGTTTGATTGCACTACATGAAATTTTTTAATGCAGTTCTGATTTTTGACTGGACT
AAAATAAGCTGTGTCTTAATGTATGTGATGAGTACTTAAAATTTTAATCCATGTGGTCCC
CTTTTTTTTGCATTGTATGTCAAATGCGCTAGTTCTTTCGTGCATGTGTAAGATTTAATG
GTTCCATTGTATTATTTGACCATGACATTTTGGAGAAACATTCCCAGCTGTAATGTTGTG
TATGGTAGTTCTCACTGGATGCTAGACTTTTCAAAACCACTATTCTTCTAATAAATTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTATTTTTCTGTTTTGCTTTTATTTTGACGTGCTGGTAGCACATCCTTGATGAATGTCA
ACTTAAAAACTCAGTTCAGGTATCCAGGTATAACTCAGCCAAACCGATTTTAAAGCTGCA
TATAACTCTCCAGCACACGGTGCCTCACACTCTTATAGTGGCATTCTATATATTCAGTTA
TTACTACTGAGCAGATAATATGGGGGTTCCTGTTAACAGTGTATTTAAAAGGACAAAATG
TGCATAAATGTATAGCCAGCACATGCAGTGCATACATATACACACACACAGGTAAACTAT
ATATTTTTATGCCACTAATAGCCAGCACAATTAAACAACATTCCTTACTGTTTCTGTTAA
CTATAACAGATGCAGTTCTTCCTCAATGTGGCTCTTGCTTCTTCACCATACTACTACTAA
ATTCAAGCACTGGTCCTTGGGTGTCTGACCTCTACATTCTAGTTTATGCAATGTCTTTAG
AGAATTCTGTGCACTGGCCACTGTGATGGAACCATTGGGCCAGGAGTGCTCTGAGTTTAT
TAGTAGTGATTCTGCCAAAGTTGGTGTTGTAACATAAGTATGTAAATGTCAAAAAGTTAG
CAGAGGCCTAGGATTACGTATCAGCAAACAATTTTGTCAGTGTGTTTTATAGCCTGGAAG
TCCTCAGTGACAAGTTCTTCTGATGTGAAGTTCTAAATCCAGTGTTTTAGCCCTTTGCAT
CTTTAATGTTAAGACTTGTCTGCTAGAGGTCTTCATTCTTTAAAACATCTTTTGTTTTCT
GCAGTACTGTCTGTGGTTAACAAAATAGATGATTCCTCTGCTTTAATATTTGATATCTTA
CATCTAAAAGGAATTCTCCCTATATAAAAACCCATAGCCTTTGAAGATATGGAAAATGGC
ATCTTTCAGATTTCTAGAAGTTCAAGTGTCATGCAACAAAACAGGAACCCCCTTTACTCT
TATGGACCTCATTTCAATATACTGTTTACAGTTTGACGGAATTGTATAATTTAATATTTC
TCTTGTACTGTAGTTTATATTTATTTACAGATTTTTTTTTGTACTGTGTGATTTGAACTT
TTTTGTTCCTTGCTATGATCAATGTTTATGTAGTAGAGCACTTATGATCACAGATTAAGT
TTTTTGGTTTGATTGCACTACATGAAATTTTTTAATGCAGTTCTGATTTTTGACTGGACT
AAAATAAGCTGTGTCTTAATGTATGTGATGAGTACTTAAAATTTTAATCCATGTGGTCCC
CTTTTTTTTGCATTGTATGTCAAATGCGCTAGTTCTTTCGTGCATGTGTAAGATTTAATG
GTTCCATTGTATTATTTGACCATGACATTTTGGAGAAACATTCCCAGCTGTAATGTTGTG
TATGGTAGTTCTCACTGGATGCTAGACTTTTCAAAACCACTATTCTTCTAATAAATTTTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               655-773, + strand, RNAz p=0.99997

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               655-773, + strand, RNAz p=0.99997

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

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               658-763, CH3#058_G05T3 Canine heart normalized cDNA Library in pBluescript 
(gb|CF409123.1|), blast E-value=9e-27, identity=90.65% 
               

               
               658-763, CH3#058_G05T7 Canine heart normalized cDNA Library in pBluescript 
(gb|CF409124.1|), blast E-value=6e-31, identity=92.52% 
               

               
               658-763, CH3#083_H09MF Canine heart normalized cDNA Library in pBluescript 
(gb|CF413088.1|), blast E-value=6e-31, identity=92.52% 
               

               
               657-738, 17000599887675 GRN_PRENEU Homo sapiens cDNA 5', mRNA sequence 
(gb|CN260464.1|), blast E-value=2e-21, identity=92.77% 
               

               
               655-738, ESTG22E2 oropharyngeal tonsils and mandibular lymph nodes of 
(gb|DN837508.1|), blast E-value=4e-32, identity=97.65% 
               

               
               657-738, KB-EST0002796 BNS6 Homo sapiens cDNA, mRNA sequence (gb|DT217712.1|), 
blast E-value=2e-21, identity=92.77%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               658-763, CH3#058_G05T3 Canine heart normalized cDNA Library in pBluescript 
(gb|CF409123.1|), blast E-value=9e-27, identity=90.65% 
               

               
               658-763, CH3#058_G05T7 Canine heart normalized cDNA Library in pBluescript 
(gb|CF409124.1|), blast E-value=6e-31, identity=92.52% 
               

               
               658-763, CH3#083_H09MF Canine heart normalized cDNA Library in pBluescript 
(gb|CF413088.1|), blast E-value=6e-31, identity=92.52% 
               

               
               657-738, 17000599887675 GRN_PRENEU Homo sapiens cDNA 5', mRNA sequence 
(gb|CN260464.1|), blast E-value=2e-21, identity=92.77% 
               

               
               655-738, ESTG22E2 oropharyngeal tonsils and mandibular lymph nodes of 
(gb|DN837508.1|), blast E-value=4e-32, identity=97.65% 
               

               
               657-738, KB-EST0002796 BNS6 Homo sapiens cDNA, mRNA sequence (gb|DT217712.1|), 
blast E-value=2e-21, identity=92.77%

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               389-773, gnl|bosTau2|chr22 (4733486-4733874)
               

               
               389-773, gnl|Hg17|chr10 (98713130-98713490)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               389-773, gnl|bosTau2|chr22 (4733486-4733874)
               

               
               389-773, gnl|Hg17|chr10 (98713130-98713490)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               sin (0.524843)
               

               
               col (0.390016)
               

               
               ebs (0.236602)
               

               
               duo (0.172801)
               

               
               nco (0.161734)
               

               
               lin (0.145603)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.524843)
               

               
               col (0.390016)
               

               
               ebs (0.236602)
               

               
               duo (0.172801)
               

               
               nco (0.161734)
               

               
               lin (0.145603)

	658-763, CH3#058_G05T3 Canine heart normalized cDNA Library in pBluescript (gb\|CF409123.1\|), blast E-value=9e-27, identity=90.65%
	658-763, CH3#058_G05T7 Canine heart normalized cDNA Library in pBluescript (gb\|CF409124.1\|), blast E-value=6e-31, identity=92.52%
	658-763, CH3#083_H09MF Canine heart normalized cDNA Library in pBluescript (gb\|CF413088.1\|), blast E-value=6e-31, identity=92.52%
	657-738, 17000599887675 GRN_PRENEU Homo sapiens cDNA 5', mRNA sequence (gb\|CN260464.1\|), blast E-value=2e-21, identity=92.77%
	655-738, ESTG22E2 oropharyngeal tonsils and mandibular lymph nodes of (gb\|DN837508.1\|), blast E-value=4e-32, identity=97.65%
	657-738, KB-EST0002796 BNS6 Homo sapiens cDNA, mRNA sequence (gb\|DT217712.1\|), blast E-value=2e-21, identity=92.77%

	389-773, gnl\|bosTau2\|chr22 (4733486-4733874)
	389-773, gnl\|Hg17\|chr10 (98713130-98713490)

	sin (0.524843)
	col (0.390016)
	ebs (0.236602)
	duo (0.172801)
	nco (0.161734)
	lin (0.145603)