Non-Coding RNA Search

Ss1.1-rsin14_p19.5

Sequence:


               
               CAGAATCGTAGAGACCTTCAGAAAGCACGGTGTCGGGATATTTCCTTAAGGTGGCCCGAG
ACACAGACGGGACTGGAAATTACCTGCTTCTAACCCATAAGCATGTGGCCCAGCTGTCTC
CATACTGCTGCTACCGAAACCGCAGGGCTCCTGCCAGACCCCCACCGTGGGTGCTTTACC
ACAATTTCTCCATTTCCAAAGACAACTGCCTTTCCATTGTTTCTGAGATCCAACCAGAGA
TGCTGGTGGAATTGGCCCCTCCATACTTCCTAAGCAACTTGCCCCCGAGTGAGAGCAGAG
ACCTCCTGAACCAGCTAAGGGAAGAAATGGCAGATTCTTCAATGGGGAGTGACTCTTCCT
CCACCCAAGAGCTTGGACATGCCTGTGTCCTGCAGTGACCTGCCTACGGAGTGAAGCCGA
GCTCATCTCATCGCATTAGGTCCTCCCTCAGGCTAGCACCTAGGCAGCCAGCCAGATTTA
AAGGCCCAAGGTTGAGGGTCAAATGTAAATACTGGAACCTGTGTCCCGAGAAATGGTGGG
CTGGGGAGATCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAATCGTAGAGACCTTCAGAAAGCACGGTGTCGGGATATTTCCTTAAGGTGGCCCGAG
ACACAGACGGGACTGGAAATTACCTGCTTCTAACCCATAAGCATGTGGCCCAGCTGTCTC
CATACTGCTGCTACCGAAACCGCAGGGCTCCTGCCAGACCCCCACCGTGGGTGCTTTACC
ACAATTTCTCCATTTCCAAAGACAACTGCCTTTCCATTGTTTCTGAGATCCAACCAGAGA
TGCTGGTGGAATTGGCCCCTCCATACTTCCTAAGCAACTTGCCCCCGAGTGAGAGCAGAG
ACCTCCTGAACCAGCTAAGGGAAGAAATGGCAGATTCTTCAATGGGGAGTGACTCTTCCT
CCACCCAAGAGCTTGGACATGCCTGTGTCCTGCAGTGACCTGCCTACGGAGTGAAGCCGA
GCTCATCTCATCGCATTAGGTCCTCCCTCAGGCTAGCACCTAGGCAGCCAGCCAGATTTA
AAGGCCCAAGGTTGAGGGTCAAATGTAAATACTGGAACCTGTGTCCCGAGAAATGGTGGG
CTGGGGAGATCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-242, - strand, RNAz p=0.609543

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-242, - strand, RNAz p=0.609543

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               41-242, gnl|bosTau2|chr11 (7770053-7770254)
               

               
               41-242, gnl|Hg17|chr2 (74658022-74657821)
               

               
               41-242, gnl|Mm7|chr6 (83091514-83091715)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               41-242, gnl|bosTau2|chr11 (7770053-7770254)
               

               
               41-242, gnl|Hg17|chr2 (74658022-74657821)
               

               
               41-242, gnl|Mm7|chr6 (83091514-83091715)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               sin (0.174948)
               

               
               duo (0.172801)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)
               

               
               duo (0.172801)

	41-242, gnl\|bosTau2\|chr11 (7770053-7770254)
	41-242, gnl\|Hg17\|chr2 (74658022-74657821)
	41-242, gnl\|Mm7\|chr6 (83091514-83091715)