Non-Coding RNA Search

Ss1.1-rsin15_a5.5

Sequence:


               
               TTCTTTGGTTGTACAGGTGTACATTTGTAAACCTTTATGCTGTAAATGGAATTTTGTCTT
ATCTCTTTGGGAAACATTTGCATTTTAGTGTACATTTATGTCCCTGCCCTCTGACCTGGC
ATATAGTGTTGTATAATGTAAATTTATTTCTCCAAATTGAGAGTGATTTTTTAAAAATTT
TTTATCTTTATATGGTTTCAGGAGTATGAACCAGTTTTCTTTTATTATTGTGAAAAACAT
TTTGTTTTATAACATAATTGTTGACTCTGTTAATATGGGCATACTAGGATTTGGATCACT
TTCAAGTCAAGAAGTCAGGGTATTGTGCATAATAGAAAGTGTTGGACTGAGATTTGGTTA
CCATGGAGGCCAATGCTTTTTCCATCTTATTAAATGTGATGTGACTTTTTTCTTTGTACA
GAAGAGTACTGTATTTTTGAATAGCCTACTCCCAAGTAATAGCAAATCTGTATGATAACA
TTTTTTTCTCTGGACATAAGACATAACAGTAACATGATGTACATTTACAAGCGGCCTTAT
GTACATTTCCCAACAATCTTTTTAAGGCAAAATTGTGACCATATGTGTATAATTAAAAAT
CGTTTTTAATCCTTTGCCTATGAAAATATTTTGGAAAAAAAAACTTGCTTTGTATATTCA
GTTTCTGAAAGATAAAGAAAGTGCTTTGTATTTTGTTGAAGTCAGTATTTTGTATAAAAC
GTTTATGTTGACCCACTTATGTTTAGTGCTAAAAACTAATGAACCATGCTGTCTCTTTTG
ATTGAACATGTAAGGGATTTTTTTATTAGAGGTCTGCAGAAGAAAAGCAATCTTCTGAGC
ACAATATTGAATATAAAGGTTTTTTTCACTTAGCTATTCAAACCATGAACCTAAAAATAA
TGGCATAAAGTTTGGGGTGCCAGGCATACTGTTCATGTTTGAAGTTGAGTTATTCTAGGT
TTCTAACCCAACATTCCATGTTGAGGCCATTAAATCCAGTCACTTGTCACTGTCCCTTCT
CTTAGTCCCACTGGTTCATCAGTGTGTCCCAGTCCCAGTGGCAGCGCTTTTTTCCCTCTG
TACAGAGCTGCTGTCTTCTACCCTTTCCAACTTTGTTTTGCCAGCCTCAGAATGTCTTGG
CCCTATGTCAAACTTTTGTTCCCAGTATCAGCTCATGTTTTCAGGATCCAAGTTGTCCTT
GTTGGAGATTGGTAGTGACTTTCCTGGATTTGCACAGTTGAATTCCTGGTTTTCCTTTAT
TCTTCTGTTCACACAAGCAATTATTTCTGCAAATTTAGGAAGTCCTAGAGAACAGCACAC
TGGGAAACTAAACCATTTTCCTGGGTTCCTGATGTTCCCACGTGTCCCAATGTTGACAAC
CCAATCTTACCAATACTTTGGGGCCCTATTCTAGAAAAAGAACTGTTACTCTAGAAATTT
TATGGTCTGCCTTTTTGGTGCCCAACCTCTGCGATTCTATCTTTTAATAAGTTGATATGG
AGTTTTGGTATAATCTGAAAGTGACATTTCAGAATAAAAAAACTTAATTAAAGGGCAGAA
CCAGTTAGGCTTTACTTTTGGGTGTCTCCTTTTGATAATGGATTGTTGCTGGACCAGTTT
GTTTAAGTCCTGGCTCTTATTGGTTCATATGAAATAATGTTATCTTCTTTGTATATTATG
TATAAATTAGAAAATGATAAATGTGTGAATAACATTGTATGAAATAAACCTGGTCTTGTG
TTTTTCTCTAGATAAAATACCCCTGTGTACCTCGATTACGATTCACATTGACCATTCAAA
TTTTCTCTGATTTATGGAAAACAAAAACATCACATGGATGTTAGTCCGGGGCCACTGATT
ATGCTGATGGTATTAACCCTGTCTTTTAATAGTCATGATCTCTGTCTAATTACATAGAGT
GGTTACACACCTCATATTATGAAACTTTAAGCCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCTTTGGTTGTACAGGTGTACATTTGTAAACCTTTATGCTGTAAATGGAATTTTGTCTT
ATCTCTTTGGGAAACATTTGCATTTTAGTGTACATTTATGTCCCTGCCCTCTGACCTGGC
ATATAGTGTTGTATAATGTAAATTTATTTCTCCAAATTGAGAGTGATTTTTTAAAAATTT
TTTATCTTTATATGGTTTCAGGAGTATGAACCAGTTTTCTTTTATTATTGTGAAAAACAT
TTTGTTTTATAACATAATTGTTGACTCTGTTAATATGGGCATACTAGGATTTGGATCACT
TTCAAGTCAAGAAGTCAGGGTATTGTGCATAATAGAAAGTGTTGGACTGAGATTTGGTTA
CCATGGAGGCCAATGCTTTTTCCATCTTATTAAATGTGATGTGACTTTTTTCTTTGTACA
GAAGAGTACTGTATTTTTGAATAGCCTACTCCCAAGTAATAGCAAATCTGTATGATAACA
TTTTTTTCTCTGGACATAAGACATAACAGTAACATGATGTACATTTACAAGCGGCCTTAT
GTACATTTCCCAACAATCTTTTTAAGGCAAAATTGTGACCATATGTGTATAATTAAAAAT
CGTTTTTAATCCTTTGCCTATGAAAATATTTTGGAAAAAAAAACTTGCTTTGTATATTCA
GTTTCTGAAAGATAAAGAAAGTGCTTTGTATTTTGTTGAAGTCAGTATTTTGTATAAAAC
GTTTATGTTGACCCACTTATGTTTAGTGCTAAAAACTAATGAACCATGCTGTCTCTTTTG
ATTGAACATGTAAGGGATTTTTTTATTAGAGGTCTGCAGAAGAAAAGCAATCTTCTGAGC
ACAATATTGAATATAAAGGTTTTTTTCACTTAGCTATTCAAACCATGAACCTAAAAATAA
TGGCATAAAGTTTGGGGTGCCAGGCATACTGTTCATGTTTGAAGTTGAGTTATTCTAGGT
TTCTAACCCAACATTCCATGTTGAGGCCATTAAATCCAGTCACTTGTCACTGTCCCTTCT
CTTAGTCCCACTGGTTCATCAGTGTGTCCCAGTCCCAGTGGCAGCGCTTTTTTCCCTCTG
TACAGAGCTGCTGTCTTCTACCCTTTCCAACTTTGTTTTGCCAGCCTCAGAATGTCTTGG
CCCTATGTCAAACTTTTGTTCCCAGTATCAGCTCATGTTTTCAGGATCCAAGTTGTCCTT
GTTGGAGATTGGTAGTGACTTTCCTGGATTTGCACAGTTGAATTCCTGGTTTTCCTTTAT
TCTTCTGTTCACACAAGCAATTATTTCTGCAAATTTAGGAAGTCCTAGAGAACAGCACAC
TGGGAAACTAAACCATTTTCCTGGGTTCCTGATGTTCCCACGTGTCCCAATGTTGACAAC
CCAATCTTACCAATACTTTGGGGCCCTATTCTAGAAAAAGAACTGTTACTCTAGAAATTT
TATGGTCTGCCTTTTTGGTGCCCAACCTCTGCGATTCTATCTTTTAATAAGTTGATATGG
AGTTTTGGTATAATCTGAAAGTGACATTTCAGAATAAAAAAACTTAATTAAAGGGCAGAA
CCAGTTAGGCTTTACTTTTGGGTGTCTCCTTTTGATAATGGATTGTTGCTGGACCAGTTT
GTTTAAGTCCTGGCTCTTATTGGTTCATATGAAATAATGTTATCTTCTTTGTATATTATG
TATAAATTAGAAAATGATAAATGTGTGAATAACATTGTATGAAATAAACCTGGTCTTGTG
TTTTTCTCTAGATAAAATACCCCTGTGTACCTCGATTACGATTCACATTGACCATTCAAA
TTTTCTCTGATTTATGGAAAACAAAAACATCACATGGATGTTAGTCCGGGGCCACTGATT
ATGCTGATGGTATTAACCCTGTCTTTTAATAGTCATGATCTCTGTCTAATTACATAGAGT
GGTTACACACCTCATATTATGAAACTTTAAGCCTGC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-117, + strand, RNAz p=0.566568
               

               
               544-663, - strand, RNAz p=0.558192

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-117, + strand, RNAz p=0.566568
               

               
               544-663, - strand, RNAz p=0.558192

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

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               56-170, + strand, RNAmicro p=0.988932

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               56-170, + strand, RNAmicro p=0.988932

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1955, gnl|bosTau2|chr11 (61305550-61303609)
               

               
               1-1955, gnl|Hg17|chr2 (20371864-20369903)
               

               
               1-1955, gnl|Mm7|chr12 (8777066-8778805)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1955, gnl|bosTau2|chr11 (61305550-61303609)
               

               
               1-1955, gnl|Hg17|chr2 (20371864-20369903)
               

               
               1-1955, gnl|Mm7|chr12 (8777066-8778805)

Expressed library(ies): 29 entry(ies)

More info

Expressed library(ies): 29 entry(ies)

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               ctl (1.53069)
               

               
               pro (1.02407)
               

               
               lin (0.728014)
               

               
               spl (0.572738)
               

               
               amn (0.417711)
               

               
               lyg (0.399308)
               

               
               aor (0.390549)
               

               
               thg (0.380373)
               

               
               bla (0.373042)
               

               
               sag (0.36543)
               

               
               sin (0.349895)
               

               
               mga (0.32041)
               

               
               ste (0.270416)
               

               
               kid (0.259471)
               

               
               ret (0.257467)
               

               
               tra (0.246184)
               

               
               med (0.232504)
               

               
               nbm (0.198649)
               

               
               nlu (0.191681)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 29 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (1.53069)
               

               
               pro (1.02407)
               

               
               lin (0.728014)
               

               
               spl (0.572738)
               

               
               amn (0.417711)
               

               
               lyg (0.399308)
               

               
               aor (0.390549)
               

               
               thg (0.380373)
               

               
               bla (0.373042)
               

               
               sag (0.36543)
               

               
               sin (0.349895)
               

               
               mga (0.32041)
               

               
               ste (0.270416)
               

               
               kid (0.259471)
               

               
               ret (0.257467)
               

               
               tra (0.246184)
               

               
               med (0.232504)
               

               
               nbm (0.198649)
               

               
               nlu (0.191681)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	1-117, + strand, RNAz p=0.566568
	544-663, - strand, RNAz p=0.558192

	1-1955, gnl\|bosTau2\|chr11 (61305550-61303609)
	1-1955, gnl\|Hg17\|chr2 (20371864-20369903)
	1-1955, gnl\|Mm7\|chr12 (8777066-8778805)

	ctl (1.53069)
	pro (1.02407)
	lin (0.728014)
	spl (0.572738)
	amn (0.417711)
	lyg (0.399308)
	aor (0.390549)
	thg (0.380373)
	bla (0.373042)
	sag (0.36543)
	sin (0.349895)
	mga (0.32041)
	ste (0.270416)
	kid (0.259471)
	ret (0.257467)
	tra (0.246184)
	med (0.232504)
	nbm (0.198649)
	nlu (0.191681)
	gul (0.177588)
	rec (0.17307)
	fhi (0.169578)
	ski (0.146735)
	pty (0.142714)
	nmm (0.132802)
	ova (0.129132)
	cbl (0.114797)
	jca (0.11396)
	eje (0.0988338)