Non-Coding RNA Search

Ss1.1-rsin15_e9.5.5

Sequence:


               
               ACACTCTGAAACTTGAAATAAGCTCGTGGTTCAGAACTCGGGGGCAAGGGCGCGGGGCTG
TGCAGGAAATGTTGGAAGTGTTACTAGTACCAGTTTCACGTTTTGTTGTCACAATTTACT
GTATTTTTTTATTTTTTCTGTTACAGTTTTGCTATAATTTATCAGAAGGTCCAAAAGTTT
GACATAACTATTTCAGTTTGCATTATTTATTTATGATGCTTTTGTCAATGTCTTTTATAC
ATTTGGAATTATAAATTATGTAAATGTTAAAATGAGCATCTCAAAGAAGTCTGTTAAATC
TTGGCCGGGAAAAAAGAAAAAAAAAATCAATCAGCTGTATTTTCAAAAAGTGGCGTCCCA
GTTTTATGAATCAGAGTTATAAATCAGAAATTCTATAAACTGATCATATAAGAAAAAAGA
ATCCAATAATCGAACATATCCTAATATTTAATGACATCTTGTAGCATAGGTGGTCTCTAA
TGCTGACAACAGATTTCTTAGAAATGCTGCTCTCTCTATTTAACTAACATTTTGTTCAGT
TTTGCCTCCAGTGGAAGCAGAAAGGGTTTTTTCAGCTGTTAAATCCTAAAAATCAATATA
ATTTATTTATGTAAAAAAAAAATCACTCAATTGATATATTTTTGAACCTTTTAAGTACTA
ATTTTCTTTTTATCAAGTAGAAAAAAAAATGTATTTGCCCTAAATCCTTAAAATACAAAT
GCTATAAAAATTCATGTATCTTGAAAGCCTTACTGCAAATGAGTATTATAGACATCCAGC
AGAGCCTGGGTTTTCTTTGTTGTCGTTGTTGTTGTTTTGTATGGAAAAGCTGCTTTCCCC
AGGTTCCACTTAGAACCTCCCGTAGGTCACAGGGTTCAATATGGATTTGATTTGAAAACC
CACCAGCATGCTGAATCCCTTGTTATATCTTATCGAACCTGTATGTTAACCCTCTGGGTG
TTTAGGCTTCTATTTGACTGCTATTGTGTCCCTGTTTGCAAAATGAAAATGACACTCTGT
GGATTATTTGCTCTGTAAGGCATAAGTGCTTCTTATGATTTTTTTGACGTTTCCAAGAGC
AAAAGCCAAATTTAAACTCTTCAGCAAACTCGAGCCTTTTCATCTAATTCCATTCACTCA
CAGCCATAACTTTTCTTGATCATTCTTCACCCCATGTCTTACATAATAAATTGTCTGTGG
TCTTGATCCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACACTCTGAAACTTGAAATAAGCTCGTGGTTCAGAACTCGGGGGCAAGGGCGCGGGGCTG
TGCAGGAAATGTTGGAAGTGTTACTAGTACCAGTTTCACGTTTTGTTGTCACAATTTACT
GTATTTTTTTATTTTTTCTGTTACAGTTTTGCTATAATTTATCAGAAGGTCCAAAAGTTT
GACATAACTATTTCAGTTTGCATTATTTATTTATGATGCTTTTGTCAATGTCTTTTATAC
ATTTGGAATTATAAATTATGTAAATGTTAAAATGAGCATCTCAAAGAAGTCTGTTAAATC
TTGGCCGGGAAAAAAGAAAAAAAAAATCAATCAGCTGTATTTTCAAAAAGTGGCGTCCCA
GTTTTATGAATCAGAGTTATAAATCAGAAATTCTATAAACTGATCATATAAGAAAAAAGA
ATCCAATAATCGAACATATCCTAATATTTAATGACATCTTGTAGCATAGGTGGTCTCTAA
TGCTGACAACAGATTTCTTAGAAATGCTGCTCTCTCTATTTAACTAACATTTTGTTCAGT
TTTGCCTCCAGTGGAAGCAGAAAGGGTTTTTTCAGCTGTTAAATCCTAAAAATCAATATA
ATTTATTTATGTAAAAAAAAAATCACTCAATTGATATATTTTTGAACCTTTTAAGTACTA
ATTTTCTTTTTATCAAGTAGAAAAAAAAATGTATTTGCCCTAAATCCTTAAAATACAAAT
GCTATAAAAATTCATGTATCTTGAAAGCCTTACTGCAAATGAGTATTATAGACATCCAGC
AGAGCCTGGGTTTTCTTTGTTGTCGTTGTTGTTGTTTTGTATGGAAAAGCTGCTTTCCCC
AGGTTCCACTTAGAACCTCCCGTAGGTCACAGGGTTCAATATGGATTTGATTTGAAAACC
CACCAGCATGCTGAATCCCTTGTTATATCTTATCGAACCTGTATGTTAACCCTCTGGGTG
TTTAGGCTTCTATTTGACTGCTATTGTGTCCCTGTTTGCAAAATGAAAATGACACTCTGT
GGATTATTTGCTCTGTAAGGCATAAGTGCTTCTTATGATTTTTTTGACGTTTCCAAGAGC
AAAAGCCAAATTTAAACTCTTCAGCAAACTCGAGCCTTTTCATCTAATTCCATTCACTCA
CAGCCATAACTTTTCTTGATCATTCTTCACCCCATGTCTTACATAATAAATTGTCTGTGG
TCTTGATCCTGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               466-585, - strand, RNAz p=0.918901

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               466-585, - strand, RNAz p=0.918901

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of AK124874, -

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK124874, -

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1212, gnl|bosTau2|chr13 (51604865-51603636)
               

               
               1-1212, gnl|Hg17|chr20 (39465361-39464169)
               

               
               1-1212, gnl|Mm7|chr2 (160689029-160687869)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1212, gnl|bosTau2|chr13 (51604865-51603636)
               

               
               1-1212, gnl|Hg17|chr20 (39465361-39464169)
               

               
               1-1212, gnl|Mm7|chr2 (160689029-160687869)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

Help | Less info


               
               tra (0.369276)
               

               
               sin (0.349895)
               

               
               fhi (0.339155)
               

               
               ova (0.258264)
               

               
               aor (0.195274)
               

               
               mcp (0.170648)
               

               
               lun (0.150489)
               

               
               ret (0.128733)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.369276)
               

               
               sin (0.349895)
               

               
               fhi (0.339155)
               

               
               ova (0.258264)
               

               
               aor (0.195274)
               

               
               mcp (0.170648)
               

               
               lun (0.150489)
               

               
               ret (0.128733)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	1-1212, gnl\|bosTau2\|chr13 (51604865-51603636)
	1-1212, gnl\|Hg17\|chr20 (39465361-39464169)
	1-1212, gnl\|Mm7\|chr2 (160689029-160687869)

	tra (0.369276)
	sin (0.349895)
	fhi (0.339155)
	ova (0.258264)
	aor (0.195274)
	mcp (0.170648)
	lun (0.150489)
	ret (0.128733)
	ecc (0.115035)
	cty (0.10408)