Non-Coding RNA Search

Ss1.1-rsin15_f15.5

Sequence:


               
               GAAAAAAAACGAAATGCTTCAGAAAATAAATGGAGCACTTCAGGATGAGATTGCTAGGAG
GAAGGCTCAATTCAAGAAAGCCTGGAGGGATGCTCCATTATATCCTGATTGGAGGAAAGA
AGAATTCGAAGCTGCAAATGTGACCCTGGATGAAGCCACTGCCCATCCTGCCCTCCTCGT
GTCTGAAAGAGGGAGGCGAGTTACCTGGCAAGAAACTTGTCAAGATCTACCCAGCTCCAC
ACAGAGATTCAACTCCATTCCCTGTGTGCTGGGTCAGCTGCGCATCAACTCAGGGAGGGC
CTACTGGGAGGTGGAGGTTGGGGACATGCAATCTTGGGACTTGGGAATTTGTAGAGATAA
TGTGACCAGGGAGGGGGCATTCATTATGTCCCCACAGAATGGTTTCTGGGCCATTAGGCT
CTATGACGGGGACTACTGGGCCCTCACCTCCCCGGAAACTTCTCTTCCTCTAAGAGAAAG
ACCCCTTAAGGTGGGGATATTCCTGGATTATGAGGCTGGAGATGTATCTTTCTACAACAT
GACAGATGGATCCCACATTTTCACCTTTCCCCAGAACACATTCTATGGTGTCCTGAGACC
ACTTTTCAGACTTTGGTCCTCTGACTCGGGCTCCCTAAACATCTGTTCAGCTGAAGGAGA
ATGTACTGATGTAATTCATAAGTCTACCCTCCAGGCGAAATGATCACTTTGCCCCAAAGA
AGATCGCATTTCTCCCCTAGCAAGATATAAATACATTTTTTCCTAGTCCCTACTGGTTCA
TTGTCAATATAAAGCTCTGTGACACAGACTTGATGATTGTCCCTCATATCAGTTCTTCCT
GTTTTTGTCATATATTCCTTCTCATTATTACCTTTTCCTATGACAACCTCCTACAAGTAT
TAGATTTCTTACACCCCCTTAGTGCATGTGACTAAAGGATGGTGTTGTATTAAAAGGTGA
ATTACAAGGATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAAAAAACGAAATGCTTCAGAAAATAAATGGAGCACTTCAGGATGAGATTGCTAGGAG
GAAGGCTCAATTCAAGAAAGCCTGGAGGGATGCTCCATTATATCCTGATTGGAGGAAAGA
AGAATTCGAAGCTGCAAATGTGACCCTGGATGAAGCCACTGCCCATCCTGCCCTCCTCGT
GTCTGAAAGAGGGAGGCGAGTTACCTGGCAAGAAACTTGTCAAGATCTACCCAGCTCCAC
ACAGAGATTCAACTCCATTCCCTGTGTGCTGGGTCAGCTGCGCATCAACTCAGGGAGGGC
CTACTGGGAGGTGGAGGTTGGGGACATGCAATCTTGGGACTTGGGAATTTGTAGAGATAA
TGTGACCAGGGAGGGGGCATTCATTATGTCCCCACAGAATGGTTTCTGGGCCATTAGGCT
CTATGACGGGGACTACTGGGCCCTCACCTCCCCGGAAACTTCTCTTCCTCTAAGAGAAAG
ACCCCTTAAGGTGGGGATATTCCTGGATTATGAGGCTGGAGATGTATCTTTCTACAACAT
GACAGATGGATCCCACATTTTCACCTTTCCCCAGAACACATTCTATGGTGTCCTGAGACC
ACTTTTCAGACTTTGGTCCTCTGACTCGGGCTCCCTAAACATCTGTTCAGCTGAAGGAGA
ATGTACTGATGTAATTCATAAGTCTACCCTCCAGGCGAAATGATCACTTTGCCCCAAAGA
AGATCGCATTTCTCCCCTAGCAAGATATAAATACATTTTTTCCTAGTCCCTACTGGTTCA
TTGTCAATATAAAGCTCTGTGACACAGACTTGATGATTGTCCCTCATATCAGTTCTTCCT
GTTTTTGTCATATATTCCTTCTCATTATTACCTTTTCCTATGACAACCTCCTACAAGTAT
TAGATTTCTTACACCCCCTTAGTGCATGTGACTAAAGGATGGTGTTGTATTAAAAGGTGA
ATTACAAGGATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61878099|ref|XP_591862.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61878099|ref|XP_591862.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               450-569, + strand, RNAz p=0.95937

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               450-569, + strand, RNAz p=0.95937

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               131-690, gnl|bosTau2|chr23 (20289535-20290096)
               

               
               131-690, gnl|Hg17|chr6 (26500578-26501072)
               

               
               131-690, gnl|Mm7|chr13 (22844834-22844318)
               


               
               138-645, gnl|bosTau2|chr12 (1728121-1728628)
               

               
               138-645, gnl|Hg17|chr6 (26616711-26617218)
               

               
               138-645, gnl|Mm7|chr13 (22825353-22824846)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               131-690, gnl|bosTau2|chr23 (20289535-20290096)
               

               
               131-690, gnl|Hg17|chr6 (26500578-26501072)
               

               
               131-690, gnl|Mm7|chr13 (22844834-22844318)
               


               
               138-645, gnl|bosTau2|chr12 (1728121-1728628)
               

               
               138-645, gnl|Hg17|chr6 (26616711-26617218)
               

               
               138-645, gnl|Mm7|chr13 (22825353-22824846)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               sin (1.22463)
               

               
               ill (0.351185)
               

               
               duo (0.345602)
               

               
               jej (0.296765)
               

               
               nje (0.16592)
               

               
               ute (0.132784)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (1.22463)
               

               
               ill (0.351185)
               

               
               duo (0.345602)
               

               
               jej (0.296765)
               

               
               nje (0.16592)
               

               
               ute (0.132784)

	131-690, gnl\|bosTau2\|chr23 (20289535-20290096)
	131-690, gnl\|Hg17\|chr6 (26500578-26501072)
	131-690, gnl\|Mm7\|chr13 (22844834-22844318)

	138-645, gnl\|bosTau2\|chr12 (1728121-1728628)
	138-645, gnl\|Hg17\|chr6 (26616711-26617218)
	138-645, gnl\|Mm7\|chr13 (22825353-22824846)

	sin (1.22463)
	ill (0.351185)
	duo (0.345602)
	jej (0.296765)
	nje (0.16592)
	ute (0.132784)