Non-Coding RNA Search

Ss1.1-rsin15_i12.5

Sequence:


               
               AAGAAAAAAAAAAAAAAAAAATGACCCTTCTAAATAATCTGTAATTACCCATTTAAAAGA
AGGGAATATGTACTTGGCCAAATACATGTGAGGAAATAAGTAAATGAAATGTATATGTAA
GTATTGGGATGAAATGTATATATACATATTGGGAGAAGATCACAGTTTTTAAATATCCCG
GTTATTTTGATATGAAAGTTTTATTTCTAAGTTTTTAAAAGTGATAAATAACTAATGTCC
TGTGTACTGTTTCAAGTGTATCTTAATATAGATGAAAACTTTGATGTGTATACCTTCAAA
AAATTACCACTGATCGTTTCTTTTCTGTATATTTAATAGATTTCTCAAAAACATATGTAC
ATATATCAGCAGGGAAATAGGTTTAAAGGACATGGAAATGGAGCAAGGATTGGGGAGAAC
AAGATACGGGAGGGGAAACTTATTTAGATACCAGCTACAACTTCATCAAAATGTACCTCA
ACTGCAAAGTCTGGACGGTAAATTTTCCATGCTCTTGGTTTATGGGGATTGTCCAGTTCA
CTTCTTGGAAGATAAAGCCTAGAACAGAAAAAAAGTGATTACAATTTTTCCCCATTCCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAAAAAAAAAAAAAAAAAATGACCCTTCTAAATAATCTGTAATTACCCATTTAAAAGA
AGGGAATATGTACTTGGCCAAATACATGTGAGGAAATAAGTAAATGAAATGTATATGTAA
GTATTGGGATGAAATGTATATATACATATTGGGAGAAGATCACAGTTTTTAAATATCCCG
GTTATTTTGATATGAAAGTTTTATTTCTAAGTTTTTAAAAGTGATAAATAACTAATGTCC
TGTGTACTGTTTCAAGTGTATCTTAATATAGATGAAAACTTTGATGTGTATACCTTCAAA
AAATTACCACTGATCGTTTCTTTTCTGTATATTTAATAGATTTCTCAAAAACATATGTAC
ATATATCAGCAGGGAAATAGGTTTAAAGGACATGGAAATGGAGCAAGGATTGGGGAGAAC
AAGATACGGGAGGGGAAACTTATTTAGATACCAGCTACAACTTCATCAAAATGTACCTCA
ACTGCAAAGTCTGGACGGTAAATTTTCCATGCTCTTGGTTTATGGGGATTGTCCAGTTCA
CTTCTTGGAAGATAAAGCCTAGAACAGAAAAAAAGTGATTACAATTTTTCCCCATTCCAT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               182-574, gnl|bosTau2|chr12 (11565596-11565171)
               

               
               182-574, gnl|Hg17|chr13 (52059368-52058929)
               

               
               182-574, gnl|Mm7|chr8 (21154600-21154031)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               182-574, gnl|bosTau2|chr12 (11565596-11565171)
               

               
               182-574, gnl|Hg17|chr13 (52059368-52058929)
               

               
               182-574, gnl|Mm7|chr8 (21154600-21154031)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cmu (0.186393)
               

               
               sin (0.174948)
               

               
               lun (0.150489)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)
               

               
               sin (0.174948)
               

               
               lun (0.150489)

	182-574, gnl\|bosTau2\|chr12 (11565596-11565171)
	182-574, gnl\|Hg17\|chr13 (52059368-52058929)
	182-574, gnl\|Mm7\|chr8 (21154600-21154031)