Non-Coding RNA Search

Ss1.1-rsin15_m13.5

Sequence:


               
               GAGGGACCAGATAACATTTGAATGGAGGGATTATATTTCAGGTGTTTTAGCTTGAAATTT
ATTTTTTAAAAAAATAAAAATAGAAAAAAAAATAGAACAAAGCCTGTGAAGCAAGTTGAT
ATAATGAACAGGCTGAGTTGTTTAGCACAGAGAGAAAATATTGACCTGTCTGCATTCTGG
TACTGTGCATACAGGTCCTAGCTGGGCAAAACATGATACATTTTGAATTATTCTCACCAG
CAAGTCAAAGGAAAATGAACAATCTTCAGGAAATGTCTGTGAATGAGTTAAACAGTAGGA
AATTCAGATTTTACCTACTTCATACAGGCATTATTTAATACTTGCCTACAGAAGTATAGC
ATTTCCAAGCTTGTGTTTGAGGAGCATCTCAGAGATGTGAGAGTAAATCTGAGATAGTTT
AAAAATTGGTAGGGGAGGAAGAAAATCCCTGCAGGTAATGATCTTATGTTAGGTGGCCAA
GTGAAATGATCTATCATTGTATTTGGGAGGTTTTATTTTCTTATGTTTTTAAAATTGGTA
TATGCTTTGTAGACATTGTATTTTTATCCAGGTGCCACTCCAATTTGTGTATGTAATAAA
ATTATTTATATTACAAGTGGAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGGACCAGATAACATTTGAATGGAGGGATTATATTTCAGGTGTTTTAGCTTGAAATTT
ATTTTTTAAAAAAATAAAAATAGAAAAAAAAATAGAACAAAGCCTGTGAAGCAAGTTGAT
ATAATGAACAGGCTGAGTTGTTTAGCACAGAGAGAAAATATTGACCTGTCTGCATTCTGG
TACTGTGCATACAGGTCCTAGCTGGGCAAAACATGATACATTTTGAATTATTCTCACCAG
CAAGTCAAAGGAAAATGAACAATCTTCAGGAAATGTCTGTGAATGAGTTAAACAGTAGGA
AATTCAGATTTTACCTACTTCATACAGGCATTATTTAATACTTGCCTACAGAAGTATAGC
ATTTCCAAGCTTGTGTTTGAGGAGCATCTCAGAGATGTGAGAGTAAATCTGAGATAGTTT
AAAAATTGGTAGGGGAGGAAGAAAATCCCTGCAGGTAATGATCTTATGTTAGGTGGCCAA
GTGAAATGATCTATCATTGTATTTGGGAGGTTTTATTTTCTTATGTTTTTAAAATTGGTA
TATGCTTTGTAGACATTGTATTTTTATCCAGGTGCCACTCCAATTTGTGTATGTAATAAA
ATTATTTATATTACAAGTGGAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-149, + strand, RNAz p=0.999793

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-149, + strand, RNAz p=0.999793

Similar Transcript(s): 1 entry(ies)

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Similar Transcript(s): 1 entry(ies)

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               94-149, 4054286 BARC 8BOV Bos taurus cDNA clone 8BOV_18G16 5', mRNA 
(gb|CK830920.1|), blast E-value=0.000000000002, identity=92.86%

Similar Transcript(s): 1 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               94-149, 4054286 BARC 8BOV Bos taurus cDNA clone 8BOV_18G16 5', mRNA 
(gb|CK830920.1|), blast E-value=0.000000000002, identity=92.86%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-627, gnl|bosTau2|chr2 (62283917-62283283)
               

               
               1-627, gnl|Hg17|chr2 (208292389-208293001)
               

               
               1-627, gnl|Mm7|chr1 (64843521-64844075)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-627, gnl|bosTau2|chr2 (62283917-62283283)
               

               
               1-627, gnl|Hg17|chr2 (208292389-208293001)
               

               
               1-627, gnl|Mm7|chr1 (64843521-64844075)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               sin (0.174948)
               

               
               thg (0.126791)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)
               

               
               thg (0.126791)

	1-627, gnl\|bosTau2\|chr2 (62283917-62283283)
	1-627, gnl\|Hg17\|chr2 (208292389-208293001)
	1-627, gnl\|Mm7\|chr1 (64843521-64844075)