Non-Coding RNA Search

Ss1.1-rsin16_n1.5

Sequence:


               
               CACCAACACATGACAGGACTGATTCTAACAGCCAACTGGAATCTGCTCACTCTGGACGGG
GCCCAATATATTCTTCCTGGGTAAAGAGTCCTGATAGAACAGGAGTTAACTTCTCAGTGA
ACTCTAACTTGAGGGACCTGACACCCTCACATCAGTTGGAGGTTGGAGGAGGCTTCCGAA
TAAGTGAGTCAAAGTGCCTGATGCAGGATGATACTAGAGGCATGTTTATGGAAACACCTG
TGTTTTGTACTTCAGAAGATGGGCTTGTATCTGGTTTCGGACGGACTGTTAATGACAGTT
TGATCGACGGAAGTTGCACACCCCAGAATCCACCACAGAAGAAAAAGGTTACAAATTTAA
TGATTTATAGTCCTTTTAATAATGTTTTTTTCATACTACTTCTGAGGGAACGCTTTCCAC
TGGTTAGTGTATCACCTCACACAAGTGGAAACCTGAGCAGCAACAGTGGTGATGGGTGTA
CCAGCAGGAGTGAAAATGGGGAGCAGGTAGAAAGCCTACCTTTACCAACACCAGTTACAG
CTTATCATGCTACTTTGGAAGAAACCACCAATAACTGTCCTGTTAAGGAAGCCTCTACTA
GTGAAAAGAATGAACCAGAAGTTCAATGGACTGCCTCAACTTCAGTGGAGCAAGTGAGAG
AGAGGAGTTATCACAGAGCTTTACTTCTCAGTGATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCAACACATGACAGGACTGATTCTAACAGCCAACTGGAATCTGCTCACTCTGGACGGG
GCCCAATATATTCTTCCTGGGTAAAGAGTCCTGATAGAACAGGAGTTAACTTCTCAGTGA
ACTCTAACTTGAGGGACCTGACACCCTCACATCAGTTGGAGGTTGGAGGAGGCTTCCGAA
TAAGTGAGTCAAAGTGCCTGATGCAGGATGATACTAGAGGCATGTTTATGGAAACACCTG
TGTTTTGTACTTCAGAAGATGGGCTTGTATCTGGTTTCGGACGGACTGTTAATGACAGTT
TGATCGACGGAAGTTGCACACCCCAGAATCCACCACAGAAGAAAAAGGTTACAAATTTAA
TGATTTATAGTCCTTTTAATAATGTTTTTTTCATACTACTTCTGAGGGAACGCTTTCCAC
TGGTTAGTGTATCACCTCACACAAGTGGAAACCTGAGCAGCAACAGTGGTGATGGGTGTA
CCAGCAGGAGTGAAAATGGGGAGCAGGTAGAAAGCCTACCTTTACCAACACCAGTTACAG
CTTATCATGCTACTTTGGAAGAAACCACCAATAACTGTCCTGTTAAGGAAGCCTCTACTA
GTGAAAAGAATGAACCAGAAGTTCAATGGACTGCCTCAACTTCAGTGGAGCAAGTGAGAG
AGAGGAGTTATCACAGAGCTTTACTTCTCAGTGATC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26330412|dbj|BAC28936.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26330412|dbj|BAC28936.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               46-202, + strand, RNAz p=0.913212

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               46-202, + strand, RNAz p=0.913212

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               7-408, gnl|bosTau2|chr4 (22264344-22264745)
               

               
               7-408, gnl|Hg17|chr7 (104341983-104342390)
               

               
               7-408, gnl|Mm7|chr5 (22538444-22538847)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-408, gnl|bosTau2|chr4 (22264344-22264745)
               

               
               7-408, gnl|Hg17|chr7 (104341983-104342390)
               

               
               7-408, gnl|Mm7|chr5 (22538444-22538847)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               sin (0.174948)
               

               
               spc (0.113366)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)
               

               
               spc (0.113366)

	7-408, gnl\|bosTau2\|chr4 (22264344-22264745)
	7-408, gnl\|Hg17\|chr7 (104341983-104342390)
	7-408, gnl\|Mm7\|chr5 (22538444-22538847)