Non-Coding RNA Search

Ss1.1-rsin18_k20.5

Sequence:


               
               ACTTTCTCTTCCACAGAAAAAGCTCTGACGAAGGGGATGCATAAGTCAGTTACTCTGCAA
ATTTCCCAAAAATTCAGAGTCAGCTCTGAGAAGCTGATGCTGACACTGTCGACATCTGAT
ATTTGAAAAAACAGAGTCTGCAGTCACCTGACAGTGTGGAGAAAACCTCCCTTCTTTATG
TAGCTGACAGGGCCTTCTGGCAGAGGAGAACGTCATTGAATCTTGACAGTGACGTTTGCC
TCCAGCTGCCTGACAGGCAAGTCAGCAGCTCAACCCCGCAGAAGCTAGCACCAAATGAAG
TTGAAAAAATAAGGCAGGAAGGTGAAAATGACCTTCAAATTAAATATTTTAAATTGGATA
TACTCCCCAAGTCAGTCTAGACAATTATATTTCCAGCATTTTTATAAGCCACCTAATTGT
GATCCAAAATTACTATTGGAATTGGAATTGGATTTGTGCAAACATGGAGAAATCTACTAT
ATTGGCTTCCACAGTTTAAAATTTAAGTCAAAGAAATTTTGACCCAAACCATATTTTTAT
TACAGGGCAACTGAAAGGTGACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTTCTCTTCCACAGAAAAAGCTCTGACGAAGGGGATGCATAAGTCAGTTACTCTGCAA
ATTTCCCAAAAATTCAGAGTCAGCTCTGAGAAGCTGATGCTGACACTGTCGACATCTGAT
ATTTGAAAAAACAGAGTCTGCAGTCACCTGACAGTGTGGAGAAAACCTCCCTTCTTTATG
TAGCTGACAGGGCCTTCTGGCAGAGGAGAACGTCATTGAATCTTGACAGTGACGTTTGCC
TCCAGCTGCCTGACAGGCAAGTCAGCAGCTCAACCCCGCAGAAGCTAGCACCAAATGAAG
TTGAAAAAATAAGGCAGGAAGGTGAAAATGACCTTCAAATTAAATATTTTAAATTGGATA
TACTCCCCAAGTCAGTCTAGACAATTATATTTCCAGCATTTTTATAAGCCACCTAATTGT
GATCCAAAATTACTATTGGAATTGGAATTGGATTTGTGCAAACATGGAGAAATCTACTAT
ATTGGCTTCCACAGTTTAAAATTTAAGTCAAAGAAATTTTGACCCAAACCATATTTTTAT
TACAGGGCAACTGAAAGGTGACTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               160-316, - strand, RNAz p=0.999022

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-316, - strand, RNAz p=0.999022

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               171-266, - strand, RNAmicro p=0.901893

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               171-266, - strand, RNAmicro p=0.901893

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

Help | Less info


               
               160-315, Oa_splbn_04D10_M13reverse Sheep spleen\brain pSport1 library Ovis 
(gb|CN823413.1|), blast E-value=0, identity=93.08% 
               

               
               160-316, EST001980 brain and spinal cord cDNA library in Gecko Gekko 
(gb|DN762852.1|), blast E-value=0, identity=98.73% 
               

               
               160-306, sh1-qg15_l0.s2 adult sheep fracture callus pool Ovis aries cDNA, 
(gb|DY488550.1|), blast E-value=0, identity=92.67% 
               

               
               160-315, sh1-yo15_l0.s2 adult sheep fracture callus pool Ovis aries cDNA, 
(gb|DY490552.1|), blast E-value=0, identity=92.45% 
               

               
               160-315, sh2P0015F18_F.ab1 adult sheep fracture callus 7d Ovis aries cDNA, 
(gb|DY495247.1|), blast E-value=0, identity=93.08% 
               

               
               160-315, sh3P0054L10_F.ab1 adult sheep fracture callus 10d Ovis aries cDNA, 
(gb|DY522862.1|), blast E-value=0, identity=92.45%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               160-315, Oa_splbn_04D10_M13reverse Sheep spleen\brain pSport1 library Ovis 
(gb|CN823413.1|), blast E-value=0, identity=93.08% 
               

               
               160-316, EST001980 brain and spinal cord cDNA library in Gecko Gekko 
(gb|DN762852.1|), blast E-value=0, identity=98.73% 
               

               
               160-306, sh1-qg15_l0.s2 adult sheep fracture callus pool Ovis aries cDNA, 
(gb|DY488550.1|), blast E-value=0, identity=92.67% 
               

               
               160-315, sh1-yo15_l0.s2 adult sheep fracture callus pool Ovis aries cDNA, 
(gb|DY490552.1|), blast E-value=0, identity=92.45% 
               

               
               160-315, sh2P0015F18_F.ab1 adult sheep fracture callus 7d Ovis aries cDNA, 
(gb|DY495247.1|), blast E-value=0, identity=93.08% 
               

               
               160-315, sh3P0054L10_F.ab1 adult sheep fracture callus 10d Ovis aries cDNA, 
(gb|DY522862.1|), blast E-value=0, identity=92.45%

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-541, gnl|bosTau2|chr20 (18195983-18196505)
               

               
               1-541, gnl|Hg17|chr5 (42836915-42836389)
               

               
               1-541, gnl|Mm7|chr15 (3105234-3105784)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-541, gnl|bosTau2|chr20 (18195983-18196505)
               

               
               1-541, gnl|Hg17|chr5 (42836915-42836389)
               

               
               1-541, gnl|Mm7|chr15 (3105234-3105784)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               sin (0.349895)
               

               
               mgp (0.230681)
               

               
               tbr (0.154178)
               

               
               kid (0.129735)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.349895)
               

               
               mgp (0.230681)
               

               
               tbr (0.154178)
               

               
               kid (0.129735)

	160-315, Oa_splbn_04D10_M13reverse Sheep spleen\brain pSport1 library Ovis (gb\|CN823413.1\|), blast E-value=0, identity=93.08%
	160-316, EST001980 brain and spinal cord cDNA library in Gecko Gekko (gb\|DN762852.1\|), blast E-value=0, identity=98.73%
	160-306, sh1-qg15_l0.s2 adult sheep fracture callus pool Ovis aries cDNA, (gb\|DY488550.1\|), blast E-value=0, identity=92.67%
	160-315, sh1-yo15_l0.s2 adult sheep fracture callus pool Ovis aries cDNA, (gb\|DY490552.1\|), blast E-value=0, identity=92.45%
	160-315, sh2P0015F18_F.ab1 adult sheep fracture callus 7d Ovis aries cDNA, (gb\|DY495247.1\|), blast E-value=0, identity=93.08%
	160-315, sh3P0054L10_F.ab1 adult sheep fracture callus 10d Ovis aries cDNA, (gb\|DY522862.1\|), blast E-value=0, identity=92.45%

	1-541, gnl\|bosTau2\|chr20 (18195983-18196505)
	1-541, gnl\|Hg17\|chr5 (42836915-42836389)
	1-541, gnl\|Mm7\|chr15 (3105234-3105784)