Non-Coding RNA Search

Ss1.1-rsin18_o21.5

Sequence:


               
               GCTAAAAGCAAGAAAAACACTAACATATTACCGTGCCCAGATTCTAATAAATATAGCTCA
ATTGAAAGCCAAACTGTGAGATCAAACAAATTAAACACTGGCAGCATCCTAAATTACACA
GCTGTTTTAGGTGTTTGATTTTGAAACAGGATGGTATATCAGTTGTTTAGTTCAATATAC
AGGGGGCGATTTATAATCTTTTGGGAAATAAATTAACTTTTATCACAAGTTTAAGAAACT
GGTCTGAGAAAAACTGTCATCAGCAGTTGCAGAGGGAAGCAAATATATTGAACACAAGGC
ATCCCTAATAGCTGGAGGCTTTACAAATTATGCGCTACTGAAGAGAATGATTTGCTGAGA
GTTGCGAAGTGGATTGACAATTTTAGGTGAATTCACAGAATTCACATTCATTTAGCCCAG
CTGCTGTCTGCAAAGAGCTAAGCATTTTCCTCTCCCACCCCTCATATTGATGTTTCATTG
CTTTATAAAGGAAGTACCAATATATTATATCTTCTGTTTCTTTGGAAGATTTAAGTTAGA
ACTTTCTATCCAAACAGATGCTACCCCTAGGAAAAACTGTCTTTAAGAACAGAAAAATAC
AGTTAATGTTTTAGATAAAATATGGCAGGCCAATTAAGTATAAAGTTAAGGTATGGAAAT
TTAGAGTTTTGCTTTCTGAGTCATAGTGCATTAATCACTCTTCTAATTTTATCTATAAGT
GAGTAAGAGGAAGTCTAAAGAATATCTGATGTCAAAGAAATGAATCCTATCTGCTATTAG
TAATAAGCAGGTAGGAAAAAAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTAAAAGCAAGAAAAACACTAACATATTACCGTGCCCAGATTCTAATAAATATAGCTCA
ATTGAAAGCCAAACTGTGAGATCAAACAAATTAAACACTGGCAGCATCCTAAATTACACA
GCTGTTTTAGGTGTTTGATTTTGAAACAGGATGGTATATCAGTTGTTTAGTTCAATATAC
AGGGGGCGATTTATAATCTTTTGGGAAATAAATTAACTTTTATCACAAGTTTAAGAAACT
GGTCTGAGAAAAACTGTCATCAGCAGTTGCAGAGGGAAGCAAATATATTGAACACAAGGC
ATCCCTAATAGCTGGAGGCTTTACAAATTATGCGCTACTGAAGAGAATGATTTGCTGAGA
GTTGCGAAGTGGATTGACAATTTTAGGTGAATTCACAGAATTCACATTCATTTAGCCCAG
CTGCTGTCTGCAAAGAGCTAAGCATTTTCCTCTCCCACCCCTCATATTGATGTTTCATTG
CTTTATAAAGGAAGTACCAATATATTATATCTTCTGTTTCTTTGGAAGATTTAAGTTAGA
ACTTTCTATCCAAACAGATGCTACCCCTAGGAAAAACTGTCTTTAAGAACAGAAAAATAC
AGTTAATGTTTTAGATAAAATATGGCAGGCCAATTAAGTATAAAGTTAAGGTATGGAAAT
TTAGAGTTTTGCTTTCTGAGTCATAGTGCATTAATCACTCTTCTAATTTTATCTATAAGT
GAGTAAGAGGAAGTCTAAAGAATATCTGATGTCAAAGAAATGAATCCTATCTGCTATTAG
TAATAAGCAGGTAGGAAAAAAATT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-799, gnl|bosTau2|chr17 (9313281-9314065)
               

               
               1-799, gnl|Hg17|chr4 (143303497-143302733)
               

               
               1-799, gnl|Mm7|chr8 (80684023-80684779)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-799, gnl|bosTau2|chr17 (9313281-9314065)
               

               
               1-799, gnl|Hg17|chr4 (143303497-143302733)
               

               
               1-799, gnl|Mm7|chr8 (80684023-80684779)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               sme (0.305437)
               

               
               cty (0.20816)
               

               
               sin (0.174948)
               

               
               cbl (0.114797)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               cty (0.20816)
               

               
               sin (0.174948)
               

               
               cbl (0.114797)

	1-799, gnl\|bosTau2\|chr17 (9313281-9314065)
	1-799, gnl\|Hg17\|chr4 (143303497-143302733)
	1-799, gnl\|Mm7\|chr8 (80684023-80684779)