Ss1.1-rsin21_e7.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATCTCTCGCTCCACCTACCCCTCTTCTGGCCGCTGGTCAGGACACTGGCTGGGCGACAAC ACGGCTGCGTGGGACCAGCTGAGGAAATCTATCATCGGCATGATGGAGTTTAGCCTCTTC GGCATCTCCTATACGGGAGCAGATATCTGTGGATTCTTTCAAGACGCTGAGTTTGAAATG TGTGCTCGCTGGATGCAGCTGGGGGCCTTTTACCCCTTCTCAAGGAACCACAACTCCATT GGGACCAGGAGGCAAGACCCTGTGTCCTGGAATGACACCTTTGTGAACATCTCCAGAAGT GTCCTGGAGACCAGATACACCCTGTTGCCGTATCTCTACACCCTGATGCACATGGCCCAC ACAGAGGGCAGCACAGTCGTGCGGCCTCTTCTCCATGAGTTTGTATCAGACCGGGTAACC TGGGATTTAGACAGTCAGTTCCTGCTGGGCCCAGCCTTCCTGGTCAGCCCTGTCCTGGAA CCTAATGCCAGAAATGTCACTGCCTATTTCCCCAGAGCCCGCTGGTATGATTATTACACG GGAGTGGACATTAATGCCCGAGGAGAGTGGAGGGAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATCTCTCGCTCCACCTACCCCTCTTCTGGCCGCTGGTCAGGACACTGGCTGGGCGACAAC ACGGCTGCGTGGGACCAGCTGAGGAAATCTATCATCGGCATGATGGAGTTTAGCCTCTTC GGCATCTCCTATACGGGAGCAGATATCTGTGGATTCTTTCAAGACGCTGAGTTTGAAATG TGTGCTCGCTGGATGCAGCTGGGGGCCTTTTACCCCTTCTCAAGGAACCACAACTCCATT GGGACCAGGAGGCAAGACCCTGTGTCCTGGAATGACACCTTTGTGAACATCTCCAGAAGT GTCCTGGAGACCAGATACACCCTGTTGCCGTATCTCTACACCCTGATGCACATGGCCCAC ACAGAGGGCAGCACAGTCGTGCGGCCTCTTCTCCATGAGTTTGTATCAGACCGGGTAACC TGGGATTTAGACAGTCAGTTCCTGCTGGGCCCAGCCTTCCTGGTCAGCCCTGTCCTGGAA CCTAATGCCAGAAATGTCACTGCCTATTTCCCCAGAGCCCGCTGGTATGATTATTACACG GGAGTGGACATTAATGCCCGAGGAGAGTGGAGGGAC |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 288-407, - strand, RNAz p=0.862669 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 288-407, - strand, RNAz p=0.862669 |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 133-247, gnl|bosTau2|chr4 (58187877-58187763) | |
| 133-247, gnl|canFam2|chr16 (10121697-10121575) | |
| 133-247, gnl|canFam2|chr16 (10121697-10121575) | |
| 133-247, gnl|danRer3|chr16 (14219789-14219682) | |
| 133-247, gnl|danRer3|chr16 (14219789-14219682) | |
| 133-247, gnl|dasNov1|scaffold_153226 (342-220) | |
| 133-247, gnl|dasNov1|scaffold_153226 (342-220) | |
| 133-247, gnl|echTel1|scaffold_287675 (59573-59451) | |
| 133-247, gnl|echTel1|scaffold_287675 (59573-59451) | |
| 133-247, gnl|fr1|chrUn (213753163-213753042) | |
| 133-247, gnl|fr1|chrUn (213753163-213753041) | |
| 133-247, gnl|galGal2|chr9 (20665033-20665155) | |
| 133-247, gnl|galGal2|chrUn (17768673-17768793) | |
| 133-247, gnl|hg17|chr7 (141247731-141247853) | |
| 133-247, gnl|hg17|chr7 (141218699-141218821) | |
| 133-247, gnl|Hg17|chr7 (141247731-141247845) | |
| 133-247, gnl|loxAfr1|scaffold_18683 (21777-21655) | |
| 133-247, gnl|mm7|chr6 (40687838-40687960) | |
| 133-247, gnl|mm7|chr6 (40659036-40659158) | |
| 133-247, gnl|Mm7|chr6 (40687838-40687952) | |
| 133-247, gnl|monDom2|scaffold_7 (333799-333921) | |
| 133-247, gnl|monDom2|scaffold_7 (306872-306994) | |
| 133-247, gnl|oryCun1|scaffold_212652 (107463-107586) | |
| 133-247, gnl|oryCun1|scaffold_212652 (73884-74007) | |
| 133-247, gnl|panTro1|chr6 (143999284-143999406) | |
| 133-247, gnl|panTro1|chr6 (143963791-143963913) | |
| 133-247, gnl|rheMac2|chr3 (179520581-179520703) | |
| 133-247, gnl|rheMac2|chr3 (179481420-179481542) | |
| 133-247, gnl|rn3|chr4 (68629000-68629122) | |
| 133-247, gnl|rn3|chr4 (68602152-68602274) | |
| 133-247, gnl|tetNig1|chrUn_random (42838171-42838293) | |
| 133-247, gnl|tetNig1|chrUn_random (42838171-42838293) | |
| 133-247, gnl|xenTro1|scaffold_150 (1823455-1823333) | |
| 133-247, gnl|xenTro1|scaffold_150 (1823455-1823335) | |
| 249-407, gnl|bosTau2|chr4 (58186438-58186280) | |
| 249-407, gnl|canFam2|chr16 (10117623-10117444) | |
| 249-407, gnl|danRer3|chr16 (14209690-14209512) | |
| 249-407, gnl|dasNov1|scaffold_14547 (7121-6941) | |
| 249-407, gnl|echTel1|scaffold_287675 (58672-58493) | |
| 249-407, gnl|fr1|chrUn (247542919-247543084) | |
| 249-407, gnl|galGal2|chr9 (20666524-20666692) | |
| 249-407, gnl|hg17|chr7 (141219537-141219717) | |
| 249-407, gnl|Hg17|chr7 (141248548-141248706) | |
| 249-407, gnl|loxAfr1|scaffold_35777 (293-465) | |
| 249-407, gnl|mm7|chr6 (40659551-40659731) | |
| 249-407, gnl|Mm7|chr6 (40689047-40689205) | |
| 249-407, gnl|monDom2|scaffold_7 (308021-308204) | |
| 249-407, gnl|oryCun1|scaffold_212652 (74375-74555) | |
| 249-407, gnl|panTro1|chr6 (143964643-143964823) | |
| 249-407, gnl|rheMac2|chr3 (179482300-179482480) | |
| 249-407, gnl|rn3|chr4 (68602694-68602874) | |
| 249-407, gnl|tetNig1|chrUn_random (42840045-42840228) | |
| 249-407, gnl|xenTro1|scaffold_150 (1822267-1822095) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 133-247, gnl|bosTau2|chr4 (58187877-58187763) | |
| 133-247, gnl|canFam2|chr16 (10121697-10121575) | |
| 133-247, gnl|canFam2|chr16 (10121697-10121575) | |
| 133-247, gnl|danRer3|chr16 (14219789-14219682) | |
| 133-247, gnl|danRer3|chr16 (14219789-14219682) | |
| 133-247, gnl|dasNov1|scaffold_153226 (342-220) | |
| 133-247, gnl|dasNov1|scaffold_153226 (342-220) | |
| 133-247, gnl|echTel1|scaffold_287675 (59573-59451) | |
| 133-247, gnl|echTel1|scaffold_287675 (59573-59451) | |
| 133-247, gnl|fr1|chrUn (213753163-213753042) | |
| 133-247, gnl|fr1|chrUn (213753163-213753041) | |
| 133-247, gnl|galGal2|chr9 (20665033-20665155) | |
| 133-247, gnl|galGal2|chrUn (17768673-17768793) | |
| 133-247, gnl|hg17|chr7 (141247731-141247853) | |
| 133-247, gnl|hg17|chr7 (141218699-141218821) | |
| 133-247, gnl|Hg17|chr7 (141247731-141247845) | |
| 133-247, gnl|loxAfr1|scaffold_18683 (21777-21655) | |
| 133-247, gnl|mm7|chr6 (40687838-40687960) | |
| 133-247, gnl|mm7|chr6 (40659036-40659158) | |
| 133-247, gnl|Mm7|chr6 (40687838-40687952) | |
| 133-247, gnl|monDom2|scaffold_7 (333799-333921) | |
| 133-247, gnl|monDom2|scaffold_7 (306872-306994) | |
| 133-247, gnl|oryCun1|scaffold_212652 (107463-107586) | |
| 133-247, gnl|oryCun1|scaffold_212652 (73884-74007) | |
| 133-247, gnl|panTro1|chr6 (143999284-143999406) | |
| 133-247, gnl|panTro1|chr6 (143963791-143963913) | |
| 133-247, gnl|rheMac2|chr3 (179520581-179520703) | |
| 133-247, gnl|rheMac2|chr3 (179481420-179481542) | |
| 133-247, gnl|rn3|chr4 (68629000-68629122) | |
| 133-247, gnl|rn3|chr4 (68602152-68602274) | |
| 133-247, gnl|tetNig1|chrUn_random (42838171-42838293) | |
| 133-247, gnl|tetNig1|chrUn_random (42838171-42838293) | |
| 133-247, gnl|xenTro1|scaffold_150 (1823455-1823333) | |
| 133-247, gnl|xenTro1|scaffold_150 (1823455-1823335) | |
| 249-407, gnl|bosTau2|chr4 (58186438-58186280) | |
| 249-407, gnl|canFam2|chr16 (10117623-10117444) | |
| 249-407, gnl|danRer3|chr16 (14209690-14209512) | |
| 249-407, gnl|dasNov1|scaffold_14547 (7121-6941) | |
| 249-407, gnl|echTel1|scaffold_287675 (58672-58493) | |
| 249-407, gnl|fr1|chrUn (247542919-247543084) | |
| 249-407, gnl|galGal2|chr9 (20666524-20666692) | |
| 249-407, gnl|hg17|chr7 (141219537-141219717) | |
| 249-407, gnl|Hg17|chr7 (141248548-141248706) | |
| 249-407, gnl|loxAfr1|scaffold_35777 (293-465) | |
| 249-407, gnl|mm7|chr6 (40659551-40659731) | |
| 249-407, gnl|Mm7|chr6 (40689047-40689205) | |
| 249-407, gnl|monDom2|scaffold_7 (308021-308204) | |
| 249-407, gnl|oryCun1|scaffold_212652 (74375-74555) | |
| 249-407, gnl|panTro1|chr6 (143964643-143964823) | |
| 249-407, gnl|rheMac2|chr3 (179482300-179482480) | |
| 249-407, gnl|rn3|chr4 (68602694-68602874) | |
| 249-407, gnl|tetNig1|chrUn_random (42840045-42840228) | |
| 249-407, gnl|xenTro1|scaffold_150 (1822267-1822095) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jej (0.296765) | |
| sin (0.174948) | |
| eli (0.151814) |