Non-Coding RNA Search

Ss1.1-rsin22_g9.5

Sequence:


               
               GTGGATTTGACTCAGAATAAATCAAAATGGGCTGTTCCCATACAAAACAGTCAAATTTGT
AAATTAGTTAATGTTTGCTAGTGCATTCTTCATTAATGTAAACAAAGTAAAGGAACTCGT
TTCAGTTATAATCTGTGTTTCCATTTTTCTGGTTACCTAGAATTGAGGTTTTTATCACCA
CATCTTACAATGTGTCGTAAAATCAAGGGTTGGATAATTTTCATTATAAGAAGTGAGTAT
TGTATGCAAAAGAACTTTTAAATAATTGCTTTTAGGAAAACACTCATTGTCATGAATTAT
TTAAAATTGTAAGTTTTGTGGCAGTAAGAATTATAAACACTCCCAGTGTCTGGCCAGACC
TTGGAAATCATTTCTTTATAATCAAATTTTTGATTATAATGAACATTGGTGTGATGGGAT
TTGACTTGAAATTCCAGTTTTTTCACTCTAATGCCTTTTTAAAAAGCTGAAATCATTACA
ATTTACAATTGTCAGTTCAATGTTGACAACTGTAGCTATAATTTTTTTTTGCTGTTTTTC
ATTTATTGACCTACTTGAACTTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGATTTGACTCAGAATAAATCAAAATGGGCTGTTCCCATACAAAACAGTCAAATTTGT
AAATTAGTTAATGTTTGCTAGTGCATTCTTCATTAATGTAAACAAAGTAAAGGAACTCGT
TTCAGTTATAATCTGTGTTTCCATTTTTCTGGTTACCTAGAATTGAGGTTTTTATCACCA
CATCTTACAATGTGTCGTAAAATCAAGGGTTGGATAATTTTCATTATAAGAAGTGAGTAT
TGTATGCAAAAGAACTTTTAAATAATTGCTTTTAGGAAAACACTCATTGTCATGAATTAT
TTAAAATTGTAAGTTTTGTGGCAGTAAGAATTATAAACACTCCCAGTGTCTGGCCAGACC
TTGGAAATCATTTCTTTATAATCAAATTTTTGATTATAATGAACATTGGTGTGATGGGAT
TTGACTTGAAATTCCAGTTTTTTCACTCTAATGCCTTTTTAAAAAGCTGAAATCATTACA
ATTTACAATTGTCAGTTCAATGTTGACAACTGTAGCTATAATTTTTTTTTGCTGTTTTTC
ATTTATTGACCTACTTGAACTTAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               134-244, - strand, RNAz p=0.77255

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               134-244, - strand, RNAz p=0.77255

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-253, gnl|bosTau2|chr1 (61647336-61647082)
               

               
               1-253, gnl|canFam2|chr34 (39694789-39695121)
               

               
               1-253, gnl|dasNov1|scaffold_67587 (4489-4171)
               

               
               1-253, gnl|echTel1|scaffold_289780 (38222-38084)
               

               
               1-253, gnl|hg17|chr3 (173642828-173643138)
               

               
               1-253, gnl|Hg17|chr3 (173643084-173642827)
               

               
               1-253, gnl|loxAfr1|scaffold_277 (165029-165348)
               

               
               1-253, gnl|mm7|chr3 (27193265-27192964)
               

               
               1-253, gnl|Mm7|chr3 (27193035-27193269)
               

               
               1-253, gnl|oryCun1|scaffold_155642 (6197-6502)
               

               
               1-253, gnl|panTro1|chr2 (177173900-177174210)
               

               
               1-253, gnl|rheMac2|chr2 (114588830-114588521)
               

               
               1-253, gnl|rn3|chr2 (113220496-113220196)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-253, gnl|bosTau2|chr1 (61647336-61647082)
               

               
               1-253, gnl|canFam2|chr34 (39694789-39695121)
               

               
               1-253, gnl|dasNov1|scaffold_67587 (4489-4171)
               

               
               1-253, gnl|echTel1|scaffold_289780 (38222-38084)
               

               
               1-253, gnl|hg17|chr3 (173642828-173643138)
               

               
               1-253, gnl|Hg17|chr3 (173643084-173642827)
               

               
               1-253, gnl|loxAfr1|scaffold_277 (165029-165348)
               

               
               1-253, gnl|mm7|chr3 (27193265-27192964)
               

               
               1-253, gnl|Mm7|chr3 (27193035-27193269)
               

               
               1-253, gnl|oryCun1|scaffold_155642 (6197-6502)
               

               
               1-253, gnl|panTro1|chr2 (177173900-177174210)
               

               
               1-253, gnl|rheMac2|chr2 (114588830-114588521)
               

               
               1-253, gnl|rn3|chr2 (113220496-113220196)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               sin (0.174948)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)

	1-253, gnl\|bosTau2\|chr1 (61647336-61647082)
	1-253, gnl\|canFam2\|chr34 (39694789-39695121)
	1-253, gnl\|dasNov1\|scaffold_67587 (4489-4171)
	1-253, gnl\|echTel1\|scaffold_289780 (38222-38084)
	1-253, gnl\|hg17\|chr3 (173642828-173643138)
	1-253, gnl\|Hg17\|chr3 (173643084-173642827)
	1-253, gnl\|loxAfr1\|scaffold_277 (165029-165348)
	1-253, gnl\|mm7\|chr3 (27193265-27192964)
	1-253, gnl\|Mm7\|chr3 (27193035-27193269)
	1-253, gnl\|oryCun1\|scaffold_155642 (6197-6502)
	1-253, gnl\|panTro1\|chr2 (177173900-177174210)
	1-253, gnl\|rheMac2\|chr2 (114588830-114588521)
	1-253, gnl\|rn3\|chr2 (113220496-113220196)