Non-Coding RNA Search

Ss1.1-rsin23_g17.5

Sequence:


               
               AATTAGAACAATGTGACACTGCAAGATTTGATTTATGAGATGCATTCCTTATGTTACCAT
GAGAGAATGTTGCTAATGATTCAGGGCTATTTCTGAAGTCTGTTTATTGCTGCTGTCCCC
AGTGATGGTGGGACTTATCTTTGCCTTACCTGATCACAAATTATGCGGGGGGCGGGGGGG
GGGAAATAACAATTTACTATTTAAAATAAAAAAAAGAACTTTGGTTTTGCTCGTTTAAGA
GCAATGAAAAAATGATGGAATGTTGACTGTGTTTGGCACCCAGGACTCTGCAGGATACCT
TCCCAAAGGTTCTCGTTCTGCGTGGCATCCATCAGCCCTCACTCTTCATCCTTCCTCACT
TTTGCTGCTGAGCTTGGCTGTACAAACTTGCACTTTCATTTGATAGTATAAATTCAGTTT
TATTTTACCATTTGAAACTAATAATAACTAAATGTTGAAGGAGAGAAAGAACACTAAGGG
ACCAATGTTTTTATTATGGAGTGTTAAAAAAGATAACTTCTGCCACTAGAGAGTGTGTTT
TGTTTTTTTTTTTTTTAAAGAGGGATTGGTTAATCTATTAGGTTGAATGAGAGGTTATTC
ATTTATTGGACTATTTCCTTAAAATCCAAGTGTACTGTCTTTAGTAATAGCTGTAACTTG
TTAAAACATTAATTTGGGGGTTTTCCCTCTCAATTGTCCATGTACACATAGTCATATTAA
AAAAAATCTGTTAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTAGAACAATGTGACACTGCAAGATTTGATTTATGAGATGCATTCCTTATGTTACCAT
GAGAGAATGTTGCTAATGATTCAGGGCTATTTCTGAAGTCTGTTTATTGCTGCTGTCCCC
AGTGATGGTGGGACTTATCTTTGCCTTACCTGATCACAAATTATGCGGGGGGCGGGGGGG
GGGAAATAACAATTTACTATTTAAAATAAAAAAAAGAACTTTGGTTTTGCTCGTTTAAGA
GCAATGAAAAAATGATGGAATGTTGACTGTGTTTGGCACCCAGGACTCTGCAGGATACCT
TCCCAAAGGTTCTCGTTCTGCGTGGCATCCATCAGCCCTCACTCTTCATCCTTCCTCACT
TTTGCTGCTGAGCTTGGCTGTACAAACTTGCACTTTCATTTGATAGTATAAATTCAGTTT
TATTTTACCATTTGAAACTAATAATAACTAAATGTTGAAGGAGAGAAAGAACACTAAGGG
ACCAATGTTTTTATTATGGAGTGTTAAAAAAGATAACTTCTGCCACTAGAGAGTGTGTTT
TGTTTTTTTTTTTTTTAAAGAGGGATTGGTTAATCTATTAGGTTGAATGAGAGGTTATTC
ATTTATTGGACTATTTCCTTAAAATCCAAGTGTACTGTCTTTAGTAATAGCTGTAACTTG
TTAAAACATTAATTTGGGGGTTTTCCCTCTCAATTGTCCATGTACACATAGTCATATTAA
AAAAAATCTGTTAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               151-341, + strand, RNAz p=0.946984
               

               
               179-338, + strand, RNAz p=0.665618

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               151-341, + strand, RNAz p=0.946984
               

               
               179-338, + strand, RNAz p=0.665618

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_003980, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_003980, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-732, gnl|bosTau2|chr9 (43660002-43660712)
               

               
               1-732, gnl|Hg17|chr6 (136706345-136705636)
               

               
               1-732, gnl|Mm7|chr10 (20005511-20006179)
               


               
               103-676, gnl|bosTau2|chr6 (2965564-2965037)
               

               
               103-676, gnl|Hg17|chr6 (136706236-136705700)
               

               
               103-676, gnl|Mm7|chr10 (20005607-20006119)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-732, gnl|bosTau2|chr9 (43660002-43660712)
               

               
               1-732, gnl|Hg17|chr6 (136706345-136705636)
               

               
               1-732, gnl|Mm7|chr10 (20005511-20006179)
               


               
               103-676, gnl|bosTau2|chr6 (2965564-2965037)
               

               
               103-676, gnl|Hg17|chr6 (136706236-136705700)
               

               
               103-676, gnl|Mm7|chr10 (20005607-20006119)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               spc (0.453463)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               nmm (0.132802)
               

               
               bla (0.124347)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.453463)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               nmm (0.132802)
               

               
               bla (0.124347)

	151-341, + strand, RNAz p=0.946984
	179-338, + strand, RNAz p=0.665618

	1-732, gnl\|bosTau2\|chr9 (43660002-43660712)
	1-732, gnl\|Hg17\|chr6 (136706345-136705636)
	1-732, gnl\|Mm7\|chr10 (20005511-20006179)

	103-676, gnl\|bosTau2\|chr6 (2965564-2965037)
	103-676, gnl\|Hg17\|chr6 (136706236-136705700)
	103-676, gnl\|Mm7\|chr10 (20005607-20006119)

	spc (0.453463)
	fty (0.17584)
	fbs (0.175346)
	sin (0.174948)
	nco (0.161734)
	fco (0.157208)
	nmm (0.132802)
	bla (0.124347)