Non-Coding RNA Search

Ss1.1-rsin23_p5.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTCTTTTATTTCCACATTTATATCACAAGGTGTCCACTTACTGG
ACCAAATAGCAAAGTTGCTCCCTTCTGCATCCTGAGAACACAGAAGTCTAGGTACTGTAC
ATTCACTAAGGCTCCTTGTTTTTGCAAATCGCGTTTATGACAAATAACCATAAGGCAAAC
GAATCTAAAGGAATGGTTATGAGTGTTTCCAGCGTACAGACAGGTCTCCTCTCACCCAAC
AGTACAGCTTACACACCAGTAGCACCCGCGGTTACTTTTGTGGGTTTTTTTTTTTGTTTT
TTTTTTTTGTTTGTTTTTTTTGGGGAGGAAGGGACTCTAGGAAGGTGAACTTTTCTAGAT
TTGTGCAGGAAGGGGAAAACGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTCTTTTATTTCCACATTTATATCACAAGGTGTCCACTTACTGG
ACCAAATAGCAAAGTTGCTCCCTTCTGCATCCTGAGAACACAGAAGTCTAGGTACTGTAC
ATTCACTAAGGCTCCTTGTTTTTGCAAATCGCGTTTATGACAAATAACCATAAGGCAAAC
GAATCTAAAGGAATGGTTATGAGTGTTTCCAGCGTACAGACAGGTCTCCTCTCACCCAAC
AGTACAGCTTACACACCAGTAGCACCCGCGGTTACTTTTGTGGGTTTTTTTTTTTGTTTT
TTTTTTTTGTTTGTTTTTTTTGGGGAGGAAGGGACTCTAGGAAGGTGAACTTTTCTAGAT
TTGTGCAGGAAGGGGAAAACGAAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               9-127, - strand, RNAz p=0.728065

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               9-127, - strand, RNAz p=0.728065

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               9-282, gnl|bosTau2|chr7 (5831728-5832001)
               

               
               9-282, gnl|canFam2|chr20 (48980027-48979518)
               

               
               9-282, gnl|echTel1|scaffold_256354 (15682-15187)
               

               
               9-282, gnl|galGal2|chr28 (3598795-3598349)
               

               
               9-282, gnl|hg17|chr19 (16546682-16547196)
               

               
               9-282, gnl|Hg17|chr19 (16546734-16547008)
               

               
               9-282, gnl|loxAfr1|scaffold_8232 (16518-16018)
               

               
               9-282, gnl|mm7|chr8 (71017627-71018094)
               

               
               9-282, gnl|Mm7|chr8 (71017677-71017928)
               

               
               9-282, gnl|monDom2|scaffold_100 (3142394-3142849)
               

               
               9-282, gnl|oryCun1|scaffold_153473 (703-1174)
               

               
               9-282, gnl|panTro1|chr20 (17232325-17232837)
               

               
               9-282, gnl|rheMac2|chr19 (16121010-16121521)
               

               
               9-282, gnl|rn3|chr16 (17767118-17766653)
               

               
               9-282, gnl|xenTro1|scaffold_1139 (12684-13334)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-282, gnl|bosTau2|chr7 (5831728-5832001)
               

               
               9-282, gnl|canFam2|chr20 (48980027-48979518)
               

               
               9-282, gnl|echTel1|scaffold_256354 (15682-15187)
               

               
               9-282, gnl|galGal2|chr28 (3598795-3598349)
               

               
               9-282, gnl|hg17|chr19 (16546682-16547196)
               

               
               9-282, gnl|Hg17|chr19 (16546734-16547008)
               

               
               9-282, gnl|loxAfr1|scaffold_8232 (16518-16018)
               

               
               9-282, gnl|mm7|chr8 (71017627-71018094)
               

               
               9-282, gnl|Mm7|chr8 (71017677-71017928)
               

               
               9-282, gnl|monDom2|scaffold_100 (3142394-3142849)
               

               
               9-282, gnl|oryCun1|scaffold_153473 (703-1174)
               

               
               9-282, gnl|panTro1|chr20 (17232325-17232837)
               

               
               9-282, gnl|rheMac2|chr19 (16121010-16121521)
               

               
               9-282, gnl|rn3|chr16 (17767118-17766653)
               

               
               9-282, gnl|xenTro1|scaffold_1139 (12684-13334)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               clu (0.239292)
               

               
               sin (0.174948)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.239292)
               

               
               sin (0.174948)

	9-282, gnl\|bosTau2\|chr7 (5831728-5832001)
	9-282, gnl\|canFam2\|chr20 (48980027-48979518)
	9-282, gnl\|echTel1\|scaffold_256354 (15682-15187)
	9-282, gnl\|galGal2\|chr28 (3598795-3598349)
	9-282, gnl\|hg17\|chr19 (16546682-16547196)
	9-282, gnl\|Hg17\|chr19 (16546734-16547008)
	9-282, gnl\|loxAfr1\|scaffold_8232 (16518-16018)
	9-282, gnl\|mm7\|chr8 (71017627-71018094)
	9-282, gnl\|Mm7\|chr8 (71017677-71017928)
	9-282, gnl\|monDom2\|scaffold_100 (3142394-3142849)
	9-282, gnl\|oryCun1\|scaffold_153473 (703-1174)
	9-282, gnl\|panTro1\|chr20 (17232325-17232837)
	9-282, gnl\|rheMac2\|chr19 (16121010-16121521)
	9-282, gnl\|rn3\|chr16 (17767118-17766653)
	9-282, gnl\|xenTro1\|scaffold_1139 (12684-13334)