Non-Coding RNA Search

Ss1.1-rsin25_j24.5

Sequence:


               
               AGTCACCAGAAGATAAAAGTAGCTTTTCTCGGAAGAAATCTAGCCCTTGGCAGTTGTGCA
AATAGTCACACAGAACTCACTCACCAGCAGTCACTCAGAGGTGGTTTCTTTGTCACCCGC
ACTTGACCTCACACAGTGCCCCTTATTTAGCTGCCCATGCGTGGTAATAAAGTAATGTGT
AAGTTGTTCTCTGGTTTTGAAATGCATCCCATATTTTAGCATTCACTTCAGCTGTATTTC
CTGTACGAGAGAGCATCACGTTTTTAGTAAGAAACTAAAGGTTTACTTTGGAGGGCGTGT
CTGGTCCCAGTTGCGCTGCTCGTGAGTGTGGTCTGTCTTAGCCTTGCCCTTCCCCTTGTT
TGTACTTCCTGGAGGGTCTGTGCACAGAATCTGGGGGTCTCCATGTGCCAAGGATGCCTA
AGATGCTACAGCCAACTGAAGGGCTGTCTCTCCCGGGTGTTAGCGACGCCAGCTTGCAGG
AAGCTGTAATCTGGGGACATTTCCAGTGTCTGGTCCAAAGTGAAAACTGCCAGTGCTTCT
GCTGACTTTGGTGCCTTTTGTAAATCACTTTTGATTCTCTTGAACTTACTTTTTGAGGCT
ATCCAGCGATAGGAAGGAGACGTGAGATTCCTTTTTATTCCTAAAAATTCTGAATTGAAA
CTTGTTTTAAAGCACCTTTTCTTTCACATGGTAACAAAGAGACAGGTCAGGAATACTGGA
ACCAAGATTTAGAGTTTAAAACTCAAAAAGTTGTTAAACAGGATGTTTTCACTTGTTGTG
TAGGAGACAACCAATATGTAAGACAGAAAAACATTCTGTTCTAAAAACCAAATGGCATTT
TAAAAAGGCATCTGTGTTCTCAAAGCAATCAGAATACAGATACAGTCATAGCAGTGAACT
GTTTTCTCTAAAATTTGACCATGCCGTCCTGTATATTGTTGTAAATATTCAGATGGAAAT
TAAAATAGTGATTTGCCCTAATTTTGCAGACTGCTGTTCCTGTTTTCTGAAGTTTAGGCC
TTCTTTGACCATTTTATATGAGGTGGCCCCGGTTCCAGTGAATGAATGCATTGTCATGTA
TCTTATGGTGACTTTGTCTTTTTAAAACTTCTTAATGAAATAAATTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTCACCAGAAGATAAAAGTAGCTTTTCTCGGAAGAAATCTAGCCCTTGGCAGTTGTGCA
AATAGTCACACAGAACTCACTCACCAGCAGTCACTCAGAGGTGGTTTCTTTGTCACCCGC
ACTTGACCTCACACAGTGCCCCTTATTTAGCTGCCCATGCGTGGTAATAAAGTAATGTGT
AAGTTGTTCTCTGGTTTTGAAATGCATCCCATATTTTAGCATTCACTTCAGCTGTATTTC
CTGTACGAGAGAGCATCACGTTTTTAGTAAGAAACTAAAGGTTTACTTTGGAGGGCGTGT
CTGGTCCCAGTTGCGCTGCTCGTGAGTGTGGTCTGTCTTAGCCTTGCCCTTCCCCTTGTT
TGTACTTCCTGGAGGGTCTGTGCACAGAATCTGGGGGTCTCCATGTGCCAAGGATGCCTA
AGATGCTACAGCCAACTGAAGGGCTGTCTCTCCCGGGTGTTAGCGACGCCAGCTTGCAGG
AAGCTGTAATCTGGGGACATTTCCAGTGTCTGGTCCAAAGTGAAAACTGCCAGTGCTTCT
GCTGACTTTGGTGCCTTTTGTAAATCACTTTTGATTCTCTTGAACTTACTTTTTGAGGCT
ATCCAGCGATAGGAAGGAGACGTGAGATTCCTTTTTATTCCTAAAAATTCTGAATTGAAA
CTTGTTTTAAAGCACCTTTTCTTTCACATGGTAACAAAGAGACAGGTCAGGAATACTGGA
ACCAAGATTTAGAGTTTAAAACTCAAAAAGTTGTTAAACAGGATGTTTTCACTTGTTGTG
TAGGAGACAACCAATATGTAAGACAGAAAAACATTCTGTTCTAAAAACCAAATGGCATTT
TAAAAAGGCATCTGTGTTCTCAAAGCAATCAGAATACAGATACAGTCATAGCAGTGAACT
GTTTTCTCTAAAATTTGACCATGCCGTCCTGTATATTGTTGTAAATATTCAGATGGAAAT
TAAAATAGTGATTTGCCCTAATTTTGCAGACTGCTGTTCCTGTTTTCTGAAGTTTAGGCC
TTCTTTGACCATTTTATATGAGGTGGCCCCGGTTCCAGTGAATGAATGCATTGTCATGTA
TCTTATGGTGACTTTGTCTTTTTAAAACTTCTTAATGAAATAAATTAT

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               1-1128, gnl|bosTau2|chr17 (23131500-23130382)
               

               
               1-1128, gnl|Hg17|chr12 (131913557-131912447)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1128, gnl|bosTau2|chr17 (23131500-23130382)
               

               
               1-1128, gnl|Hg17|chr12 (131913557-131912447)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

Help | Less info


               
               pro (0.512033)
               

               
               tes (0.415628)
               

               
               sin (0.349895)
               

               
               sme (0.305437)
               

               
               ski (0.29347)
               

               
               fce (0.271592)
               

               
               mgm (0.180343)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               tra (0.123092)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               tes (0.415628)
               

               
               sin (0.349895)
               

               
               sme (0.305437)
               

               
               ski (0.29347)
               

               
               fce (0.271592)
               

               
               mgm (0.180343)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               tra (0.123092)

	1-1128, gnl\|bosTau2\|chr17 (23131500-23130382)
	1-1128, gnl\|Hg17\|chr12 (131913557-131912447)

	pro (0.512033)
	tes (0.415628)
	sin (0.349895)
	sme (0.305437)
	ski (0.29347)
	fce (0.271592)
	mgm (0.180343)
	rec (0.17307)
	mga (0.160205)
	lun (0.150489)
	isp (0.150376)
	cst (0.140036)
	che (0.136314)
	ste (0.135208)
	sug (0.127291)
	thg (0.126791)
	tra (0.123092)