Non-Coding RNA Search

Ss1.1-rsin31_c4.5

Sequence:


               
               GGAAAGTCCTATTTGCCCTGTATACTGCTGCTTACTGTGACTAAAATGGGACATTAGCAG
CCCTGCTCATCTTTCTTTCCATAGCAGTAGTGACAGCACTGCTGCAAAAAAGAAGCTATT
TTATATACCTGGTCTTAAAGGATTGGATGTGTTATGGAATTAGCTTCTCACTACATGTAA
AGGCCATTCTTTCCTAGCTGGCTGTAGTAGGGAAAAAATATCAAAAGTCAGATTTAAAGA
GAAAGTTGTCAGGCACCTTGCCACTGTAGCTAAAAGGATTAAAATAACAGAAGAGCTAGC
TGCTTTTCAATTTGAAATGAGAAAATGTGATTGTTAACTATATAGTCTGATTTTGTCTCT
TTTTTTCTTAAGGGCTTGCCTGTTGCTTTAGACAAGCATATTCTTGGTTTTGACACAGGA
GGTAAGAGATTTTGCTTTAATTCAAACTGTTTTTAGAGATTTAGTGAATATTTGGAGGAA
ATGAGAGAATAAATACAAAAGTTATTAATGCAGTGTTTCTTATGAAACAGATGCGGTTCT
TAACGAAGCTGCTCAAATTCTGCGATTGCTGCATATAGAAGAGCTCAGAGAGCTACAGAC
AAAAATTAATGAAGCCATAGTAGCTGTTCAGGCCATTATTGCTGATCCAAAGACAGACCA
TAGACTGGGGAAAGTTGGAAGATGAACGTTTTAGGATTTCAGCTTCTCACCTACTTAGTA
CAATTGGGAACCATGTATACACTCTGGCATGTGTTTGGAAATGTCATGTTTTTGAGGGAA
GAATCTCAGAAAATTGACTACATTCTATAGATTTAC------------TTCTTTAATAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAAGTCCTATTTGCCCTGTATACTGCTGCTTACTGTGACTAAAATGGGACATTAGCAG
CCCTGCTCATCTTTCTTTCCATAGCAGTAGTGACAGCACTGCTGCAAAAAAGAAGCTATT
TTATATACCTGGTCTTAAAGGATTGGATGTGTTATGGAATTAGCTTCTCACTACATGTAA
AGGCCATTCTTTCCTAGCTGGCTGTAGTAGGGAAAAAATATCAAAAGTCAGATTTAAAGA
GAAAGTTGTCAGGCACCTTGCCACTGTAGCTAAAAGGATTAAAATAACAGAAGAGCTAGC
TGCTTTTCAATTTGAAATGAGAAAATGTGATTGTTAACTATATAGTCTGATTTTGTCTCT
TTTTTTCTTAAGGGCTTGCCTGTTGCTTTAGACAAGCATATTCTTGGTTTTGACACAGGA
GGTAAGAGATTTTGCTTTAATTCAAACTGTTTTTAGAGATTTAGTGAATATTTGGAGGAA
ATGAGAGAATAAATACAAAAGTTATTAATGCAGTGTTTCTTATGAAACAGATGCGGTTCT
TAACGAAGCTGCTCAAATTCTGCGATTGCTGCATATAGAAGAGCTCAGAGAGCTACAGAC
AAAAATTAATGAAGCCATAGTAGCTGTTCAGGCCATTATTGCTGATCCAAAGACAGACCA
TAGACTGGGGAAAGTTGGAAGATGAACGTTTTAGGATTTCAGCTTCTCACCTACTTAGTA
CAATTGGGAACCATGTATACACTCTGGCATGTGTTTGGAAATGTCATGTTTTTGAGGGAA
GAATCTCAGAAAATTGACTACATTCTATAGATTTAC------------TTCTTTAATAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               7-816, gnl|bosTau2|chr10 (29668475-29667649)
               

               
               7-816, gnl|Hg17|chr14 (51540278-51541116)
               

               
               7-816, gnl|Mm7|chr14 (17470625-17469938)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-816, gnl|bosTau2|chr10 (29668475-29667649)
               

               
               7-816, gnl|Hg17|chr14 (51540278-51541116)
               

               
               7-816, gnl|Mm7|chr14 (17470625-17469938)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               sin (0.174948)
               

               
               ret (0.128733)
               

               
               thg (0.126791)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)
               

               
               ret (0.128733)
               

               
               thg (0.126791)

	7-816, gnl\|bosTau2\|chr10 (29668475-29667649)
	7-816, gnl\|Hg17\|chr14 (51540278-51541116)
	7-816, gnl\|Mm7\|chr14 (17470625-17469938)