Non-Coding RNA Search

Ss1.1-rsin31_h3.5

Sequence:


               
               GTTCATTCTGCACACAGAAGGTAGAATCAAAACAATTAATTGTATCATCTTCTTAACTTG
TGGCTGCCCATTGCTCTTAAGCTAAAAGTAAAAATCCCTGCCATGGCCACAAAGTCTTGC
GTGATCTGAAGCACATCCTATGCCGGGCTCCCTTTCACTCTGTACATGCCAGTCAAGCTA
GTCTTTAAAATTTCAGCACATTGGGTCTTCCTGCCCCAGGGCCCTTGCACATGTTTTTCC
TTCTCTGTATATGATTTTCTTTCATCCCCTCTTCCCAAAGCTCTGACTCATCCTCCCAAG
TGCATCTTAAATGATTACTTCTTCCTGAAAGACCTCCTGACTTTCATAACTAGGTCCACT
CTCCCTCATACCTTAAAAACAAATGTTTGTGGTGTGAACATATAATTAATGTCTGTTTCC
CCTCCTAGGCCACAGGCTCTGTGAAGGCAGGGCCCCAGACTTTGCATCCCCAGAGCCTAG
CCCAGTTTCAACGAATAGGTATTGACTGAATCATGACATTTAATTAGGAATTATGAAACC
AGTCGAGCAATTCTACTTGACCAGTATGTAAGAGAGTGCCAGTGTGAATTCTTTACTAGC
ATGAAAACCTGAATTCCTGTCCAGACTCTGCCACCTGCTGGCTATGCTGTTATGAATAAA
TTCCAGATCCTCTCAGAGCCTGTTTCCTCCTCTGTACAATGAAGGTACCAACAGCACTTC
ACATGGTTGTAGCAAGAAACTAATGATATAACATAAAAGCATTTTCAACTGTGAAACGAG
GCATAAAAATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCATTCTGCACACAGAAGGTAGAATCAAAACAATTAATTGTATCATCTTCTTAACTTG
TGGCTGCCCATTGCTCTTAAGCTAAAAGTAAAAATCCCTGCCATGGCCACAAAGTCTTGC
GTGATCTGAAGCACATCCTATGCCGGGCTCCCTTTCACTCTGTACATGCCAGTCAAGCTA
GTCTTTAAAATTTCAGCACATTGGGTCTTCCTGCCCCAGGGCCCTTGCACATGTTTTTCC
TTCTCTGTATATGATTTTCTTTCATCCCCTCTTCCCAAAGCTCTGACTCATCCTCCCAAG
TGCATCTTAAATGATTACTTCTTCCTGAAAGACCTCCTGACTTTCATAACTAGGTCCACT
CTCCCTCATACCTTAAAAACAAATGTTTGTGGTGTGAACATATAATTAATGTCTGTTTCC
CCTCCTAGGCCACAGGCTCTGTGAAGGCAGGGCCCCAGACTTTGCATCCCCAGAGCCTAG
CCCAGTTTCAACGAATAGGTATTGACTGAATCATGACATTTAATTAGGAATTATGAAACC
AGTCGAGCAATTCTACTTGACCAGTATGTAAGAGAGTGCCAGTGTGAATTCTTTACTAGC
ATGAAAACCTGAATTCCTGTCCAGACTCTGCCACCTGCTGGCTATGCTGTTATGAATAAA
TTCCAGATCCTCTCAGAGCCTGTTTCCTCCTCTGTACAATGAAGGTACCAACAGCACTTC
ACATGGTTGTAGCAAGAAACTAATGATATAACATAAAAGCATTTTCAACTGTGAAACGAG
GCATAAAAATAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               117-236, - strand, RNAz p=0.597393
               

               
               317-434, - strand, RNAz p=0.647443

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               117-236, - strand, RNAz p=0.597393
               

               
               317-434, - strand, RNAz p=0.647443

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-434, gnl|bosTau2|chr4 (23981864-23982289)
               

               
               2-434, gnl|Hg17|chr7 (104995457-104995050)
               

               
               2-434, gnl|Mm7|chr12 (31089934-31090344)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-434, gnl|bosTau2|chr4 (23981864-23982289)
               

               
               2-434, gnl|Hg17|chr7 (104995457-104995050)
               

               
               2-434, gnl|Mm7|chr12 (31089934-31090344)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               sin (0.174948)
               

               
               lin (0.145603)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)
               

               
               lin (0.145603)

	117-236, - strand, RNAz p=0.597393
	317-434, - strand, RNAz p=0.647443

	2-434, gnl\|bosTau2\|chr4 (23981864-23982289)
	2-434, gnl\|Hg17\|chr7 (104995457-104995050)
	2-434, gnl\|Mm7\|chr12 (31089934-31090344)