Non-Coding RNA Search

Ss1.1-rsin31_h5.5

Sequence:


               
               AAAAAAAAAAGAAAAGAAAATGAGAGTGATGAGCAACTTCTGCAGTTCATAAAAATTTTA
GATAATTCTTGGTATCTATAAAAGCCAAGTTTTTTTTAAAATAAAGCCATTAGAATTAAG
ATAGCATGAGTTTTTTTTCCTTTACTTTCTTGTACTTACCATGTATTTAGCAATAGGTGA
TACAAAATGTTTTGCTTGCCAGCTAAGTGATTTCATAGATGAATAGAAAATATTTAGGTT
TCCCTTCATTGAATTATGAAGACAGTTGGAGCAGTAGTAATTGAAGAGACTCTGTACCTC
CTAGAATAAGTAGCAATGCATATGCCACTCCTGATTTTTCTTGCATTTTAATTCCACAGC
CAAACTGCAGCCTTTGTCACTAGCACAGTGACATAACCATGACTTCATACACATGGTCTA
GAACTTGTACCCTTAGCAAGCTATCAAGAATAAAATTTATCAAAGGTTAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAAAAGAAAAGAAAATGAGAGTGATGAGCAACTTCTGCAGTTCATAAAAATTTTA
GATAATTCTTGGTATCTATAAAAGCCAAGTTTTTTTTAAAATAAAGCCATTAGAATTAAG
ATAGCATGAGTTTTTTTTCCTTTACTTTCTTGTACTTACCATGTATTTAGCAATAGGTGA
TACAAAATGTTTTGCTTGCCAGCTAAGTGATTTCATAGATGAATAGAAAATATTTAGGTT
TCCCTTCATTGAATTATGAAGACAGTTGGAGCAGTAGTAATTGAAGAGACTCTGTACCTC
CTAGAATAAGTAGCAATGCATATGCCACTCCTGATTTTTCTTGCATTTTAATTCCACAGC
CAAACTGCAGCCTTTGTCACTAGCACAGTGACATAACCATGACTTCATACACATGGTCTA
GAACTTGTACCCTTAGCAAGCTATCAAGAATAAAATTTATCAAAGGTTAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               12-465, gnl|bosTau2|chr22 (23464276-23463833)
               

               
               12-465, gnl|Hg17|chr3 (69237454-69237904)
               

               
               12-465, gnl|Mm7|chr6 (97321669-97322066)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-465, gnl|bosTau2|chr22 (23464276-23463833)
               

               
               12-465, gnl|Hg17|chr3 (69237454-69237904)
               

               
               12-465, gnl|Mm7|chr6 (97321669-97322066)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               sin (0.174948)
               

               
               rec (0.17307)
               

               
               ret (0.128733)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               ret (0.128733)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

	12-465, gnl\|bosTau2\|chr22 (23464276-23463833)
	12-465, gnl\|Hg17\|chr3 (69237454-69237904)
	12-465, gnl\|Mm7\|chr6 (97321669-97322066)

	sin (0.174948)
	rec (0.17307)
	ret (0.128733)
	ebs (0.118301)
	spc (0.113366)