Ss1.1-rsin31_h9.5
|
TCGAAAGACTGTCCGGGGCAGGCAGGGTGTCGTCCCTCCCGCAGCAAGGCCAGGCCGACG
ACCGGGTAAGAAGCCTCTTCCTACCAGGAGGTCTCGGCCGAAGCCACCACCCGTAGACGA
TGCTGAGGTTGATGAGCTGGTGCTTCAGACCAAGCGGAGCTCCCGGAGGCAGAGCCTGGA
GCTGCAGAAGTGCGAGGAGATCCTCCACAAGCTCGTGAAGTACCGCTTCAGCTGGCCCTT
CAGGGAGCCCGTGACCAGAGACGAGGCCGAGGACTACTACGACGTGATCGCCCACCCCAT
GGACTTCCAGACGATGCAGAACAAGTGTTCCTGTGGGAGCTACCGCTCTGTGCAGGAGTT
TCTCGCCGACATGAAACAAGTGTTTACCAACGCCGAGCTTTACAACTGCCGCGGCAGCCA
CGTGCTGAACTGCACGGTGAAGACAGAACAGTGTCTGGTGGCTCTGTTGCATAAACACCT
TCCTGGCCACCCGTACGTCCGTAGGAAACGCAAGAAGTTTCCCGATCGGCTTGCCGAAGA
TGAAGGGGACAGTGAGCCAGAGCCCGTTGGGCAGTCCAGGGGACGAAGACAGAAGAAATA
GAGAGGCAGGGCCCTGGTGACGGTATCAGTGAGTGCCATACCGAATTCTGTATTCACCAG
CAGCACGAGAGAGGTGTGGTCTGTTGAGTTGATCTTGGCAGAGTAAAGGGACATGTCCCG
CAGCCATTCCCGAATACCCCTCCCCTCCTTCGTGACGGCTCTCTCCCCACTCCCGCCCCG
CCTCACCCCGGCAAAGAAAAAACCTAAGGCACTTCACTCAGAGACTGGAGCCCTGCTTGT
AACCAGGCATAGAACCTTGACTTTGATGGGTCTGGCAGAAGGGTGTTGGAGCCCAGCCCA
CCCACATACCAGACAAGCTCTTAGGGGAGCAGAAGAAAAGCAGGAAGAATTTAAATGTTT
AATTTTTTTTAAATTGACTTTTCTAGTTATTAAAAGTTGCTTGTTTCAGCAGTGATCTTG
TATAAAGAACATCTTGTAAAAACATTTCTGTCGTCTTGCTTTGGCACATGTACAGTACAA
TTTATATGATAAGGTGTTTGCTTTACTTTTGCCCGTTTCCTCCCTCAGCCCATGCTCCCC
GTTAGAGAAGCTGGGCTGGGGCCATCGGGGCAAGCAGTGGGGACCTGGTCGGGACAGCCC
TCTGCCTGCCCTGGTGGCTGTTGCTGCCGCCTTCACCTGCAGCCGCCCCTGCCATGTGGT
TCAGGCTTCAGACTCGGGACTCCCTGAGAACCCGAGTCCCTCCGTGCCCAGTGTCAGGGT
GGGGGACGGAGGGGCTCAGCGGCCCCTTCCTGCAGTGAGTCTAGCGCTAGTAGTTATGTT
GAGGCCAGACTTTGTAGTCTTCTTTCCGTCTTAAGGGCAGATTTTGATAAAAATGCAAAA
CAGGGTTTAATTTTCTTTTCTATCAACTTTGAATTTGGAAATTTGGAGCACCTAAGCTCT
TCTGTACCTATTTAAATGAAGGGAAAAGAACTTCACCGAGGGGACTGCCGCTCACAGAAC
CTGAGAATAAAGCCTCTGAAAGTGAACCTTCAAGGTGTGGTCGCTGTCTCCGGCCTCCCT
GGCATTTGCTCCAGGGGCTGCTGGGCAGGTCTGCTGTCCTGGGCCTGGAGTGAGTTAGCA
CTGACGTATGGTTTCACAACCCCAGTCGCCAACCCCTTCCCTGCCTCTTACCCTAGAGCC
AGTCTGTTCTTGTTAACAGTGAGAATTCTGTGTTCCCACTTCAGTGACACCTGAGTTGTT
TGTTGTTTTTTAAATTGTCTTTAAGGAGGAAGGGCCCCATTAAAGGGTAAACTTGTAATA
AATTGGAATTTCAAATAAACATTATGTACTTGTGTTTATAAAAAAAAAAAAAAAAAAAAA
AGGGGGGGGGCCCTTTTAAATTTTCCTTGGGGGGGCCCAATTTTACCCTTCCCCTTTTTT
TTTGAAAAAAGG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TCGAAAGACTGTCCGGGGCAGGCAGGGTGTCGTCCCTCCCGCAGCAAGGCCAGGCCGACG
ACCGGGTAAGAAGCCTCTTCCTACCAGGAGGTCTCGGCCGAAGCCACCACCCGTAGACGA
TGCTGAGGTTGATGAGCTGGTGCTTCAGACCAAGCGGAGCTCCCGGAGGCAGAGCCTGGA
GCTGCAGAAGTGCGAGGAGATCCTCCACAAGCTCGTGAAGTACCGCTTCAGCTGGCCCTT
CAGGGAGCCCGTGACCAGAGACGAGGCCGAGGACTACTACGACGTGATCGCCCACCCCAT
GGACTTCCAGACGATGCAGAACAAGTGTTCCTGTGGGAGCTACCGCTCTGTGCAGGAGTT
TCTCGCCGACATGAAACAAGTGTTTACCAACGCCGAGCTTTACAACTGCCGCGGCAGCCA
CGTGCTGAACTGCACGGTGAAGACAGAACAGTGTCTGGTGGCTCTGTTGCATAAACACCT
TCCTGGCCACCCGTACGTCCGTAGGAAACGCAAGAAGTTTCCCGATCGGCTTGCCGAAGA
TGAAGGGGACAGTGAGCCAGAGCCCGTTGGGCAGTCCAGGGGACGAAGACAGAAGAAATA
GAGAGGCAGGGCCCTGGTGACGGTATCAGTGAGTGCCATACCGAATTCTGTATTCACCAG
CAGCACGAGAGAGGTGTGGTCTGTTGAGTTGATCTTGGCAGAGTAAAGGGACATGTCCCG
CAGCCATTCCCGAATACCCCTCCCCTCCTTCGTGACGGCTCTCTCCCCACTCCCGCCCCG
CCTCACCCCGGCAAAGAAAAAACCTAAGGCACTTCACTCAGAGACTGGAGCCCTGCTTGT
AACCAGGCATAGAACCTTGACTTTGATGGGTCTGGCAGAAGGGTGTTGGAGCCCAGCCCA
CCCACATACCAGACAAGCTCTTAGGGGAGCAGAAGAAAAGCAGGAAGAATTTAAATGTTT
AATTTTTTTTAAATTGACTTTTCTAGTTATTAAAAGTTGCTTGTTTCAGCAGTGATCTTG
TATAAAGAACATCTTGTAAAAACATTTCTGTCGTCTTGCTTTGGCACATGTACAGTACAA
TTTATATGATAAGGTGTTTGCTTTACTTTTGCCCGTTTCCTCCCTCAGCCCATGCTCCCC
GTTAGAGAAGCTGGGCTGGGGCCATCGGGGCAAGCAGTGGGGACCTGGTCGGGACAGCCC
TCTGCCTGCCCTGGTGGCTGTTGCTGCCGCCTTCACCTGCAGCCGCCCCTGCCATGTGGT
TCAGGCTTCAGACTCGGGACTCCCTGAGAACCCGAGTCCCTCCGTGCCCAGTGTCAGGGT
GGGGGACGGAGGGGCTCAGCGGCCCCTTCCTGCAGTGAGTCTAGCGCTAGTAGTTATGTT
GAGGCCAGACTTTGTAGTCTTCTTTCCGTCTTAAGGGCAGATTTTGATAAAAATGCAAAA
CAGGGTTTAATTTTCTTTTCTATCAACTTTGAATTTGGAAATTTGGAGCACCTAAGCTCT
TCTGTACCTATTTAAATGAAGGGAAAAGAACTTCACCGAGGGGACTGCCGCTCACAGAAC
CTGAGAATAAAGCCTCTGAAAGTGAACCTTCAAGGTGTGGTCGCTGTCTCCGGCCTCCCT
GGCATTTGCTCCAGGGGCTGCTGGGCAGGTCTGCTGTCCTGGGCCTGGAGTGAGTTAGCA
CTGACGTATGGTTTCACAACCCCAGTCGCCAACCCCTTCCCTGCCTCTTACCCTAGAGCC
AGTCTGTTCTTGTTAACAGTGAGAATTCTGTGTTCCCACTTCAGTGACACCTGAGTTGTT
TGTTGTTTTTTAAATTGTCTTTAAGGAGGAAGGGCCCCATTAAAGGGTAAACTTGTAATA
AATTGGAATTTCAAATAAACATTATGTACTTGTGTTTATAAAAAAAAAAAAAAAAAAAAA
AGGGGGGGGGCCCTTTTAAATTTTCCTTGGGGGGGCCCAATTTTACCCTTCCCCTTTTTT
TTTGAAAAAAGG
|
|
gi|61887671|ref|XP_608021.1| |
Protein identifier
|
gi|61887671|ref|XP_608021.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
2-141, gnl|bosTau2|chr25 (28202867-28202728) |
|
2-141, gnl|canFam2|chr6 (9775930-9775539) |
|
2-141, gnl|dasNov1|scaffold_22468 (9732-9346) |
|
2-141, gnl|echTel1|scaffold_101588 (3276-3671) |
|
2-141, gnl|galGal2|chr19 (140283-139872) |
|
2-141, gnl|hg17|chr7 (72302718-72303117) |
|
2-141, gnl|Hg17|chr7 (72303102-72302963) |
|
2-141, gnl|loxAfr1|scaffold_68664 (5345-4945) |
|
2-141, gnl|mm7|chr5 (134214112-134213687) |
|
2-141, gnl|Mm7|chr5 (134213700-134213824) |
|
2-141, gnl|monDom2|scaffold_77 (5768822-5769211) |
|
2-141, gnl|oryCun1|scaffold_180761 (10218-10587) |
|
2-141, gnl|panTro1|chr6 (73984505-73984904) |
|
2-141, gnl|rheMac2|chr3 (50957914-50958310) |
|
2-141, gnl|rn3|chr12 (22580189-22580566) |
| |
|
616-1905, gnl|bosTau2|chr25 (28200442-28199183) |
|
616-1905, gnl|Hg17|chr7 (72300675-72299391) |
|
616-1905, gnl|Mm7|chr5 (134216241-134217409) |
| |
|
1476-1607, gnl|bosTau2|chr24 (41526738-41526870) |
|
1476-1607, gnl|Hg17|chr10 (87756878-87756756) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
2-141, gnl|bosTau2|chr25 (28202867-28202728) |
|
2-141, gnl|canFam2|chr6 (9775930-9775539) |
|
2-141, gnl|dasNov1|scaffold_22468 (9732-9346) |
|
2-141, gnl|echTel1|scaffold_101588 (3276-3671) |
|
2-141, gnl|galGal2|chr19 (140283-139872) |
|
2-141, gnl|hg17|chr7 (72302718-72303117) |
|
2-141, gnl|Hg17|chr7 (72303102-72302963) |
|
2-141, gnl|loxAfr1|scaffold_68664 (5345-4945) |
|
2-141, gnl|mm7|chr5 (134214112-134213687) |
|
2-141, gnl|Mm7|chr5 (134213700-134213824) |
|
2-141, gnl|monDom2|scaffold_77 (5768822-5769211) |
|
2-141, gnl|oryCun1|scaffold_180761 (10218-10587) |
|
2-141, gnl|panTro1|chr6 (73984505-73984904) |
|
2-141, gnl|rheMac2|chr3 (50957914-50958310) |
|
2-141, gnl|rn3|chr12 (22580189-22580566) |
| |
|
616-1905, gnl|bosTau2|chr25 (28200442-28199183) |
|
616-1905, gnl|Hg17|chr7 (72300675-72299391) |
|
616-1905, gnl|Mm7|chr5 (134216241-134217409) |
| |
|
1476-1607, gnl|bosTau2|chr24 (41526738-41526870) |
|
1476-1607, gnl|Hg17|chr10 (87756878-87756756) |
|
ebs (0.354904) |
|
ill (0.351185) |
|
sin (0.349895) |
|
eye (0.341006) |
|
cag (0.302389) |
|
lyg (0.266205) |
|
ova (0.258264) |
|
bla (0.248694) |
|
ece (0.229305) |
|
mas (0.210305) |
|
cty (0.20816) |
|
fli (0.202881) |
|
aor (0.195274) |
|
col (0.195008) |
|
mcp (0.170648) |
|
fhi (0.169578) |
|
eli (0.151814) |
|
lin (0.145603) |
|
che (0.136314) |
|
ssp (0.13552) |
|
cly (0.120642) |
|
pgl (0.118483) |
|
nbm (0.0993246) |
|
eje (0.0988338) |
|
ldo (0.0970026) |
|
ebs (0.354904) |
|
ill (0.351185) |
|
sin (0.349895) |
|
eye (0.341006) |
|
cag (0.302389) |
|
lyg (0.266205) |
|
ova (0.258264) |
|
bla (0.248694) |
|
ece (0.229305) |
|
mas (0.210305) |
|
cty (0.20816) |
|
fli (0.202881) |
|
aor (0.195274) |
|
col (0.195008) |
|
mcp (0.170648) |
|
fhi (0.169578) |
|
eli (0.151814) |
|
lin (0.145603) |
|
che (0.136314) |
|
ssp (0.13552) |
|
cly (0.120642) |
|
pgl (0.118483) |
|
nbm (0.0993246) |
|
eje (0.0988338) |
|
ldo (0.0970026) |
