Ss1.1-rsin35_n3.5
|
TGTTTCATGGCTGAAGCCAGGCTAAATTGCATGCCTTCTGACTCCCGATCCATTTCACGG
ATGGATTCTGTTCGTGTCTGTTCCTGGAGACAAGTCTTTGGATGTTCTGGAGAAATATTA
GTATTAGGGGGCCTTTGAGGGTTTTATCCTGTAGAAAAATATCCGAGGATAGGGTGGGGA
GGGGCGGGCAAAGCAGAGGACTTCCGATGATGATAGGCGTCAAGGGCACCTGTCAGGTGG
TCAGCTTCTCTGGGCATCCATTTAGCAGGTGCCCTGGGTGATGTTTGTAATCAGGGAAGT
TTGGTTAACAAAAAAATCTAACCTGCGAGTAGACATGAGACCTTTAGAAAGTCAACCGAG
GCTATCAAAAGAATTAAAATCTTATTTGAATTGAGTAGCCTGTCTCACTGTAGACAGAAA
GGTTTTTTTTTTTCCTTCTTCCGTGAAAATGCTTTTTAATTAGTACAGTTGTTACTATTT
AAGAAAAAATACCCTAAGTACTCTGTTTACTTCTGGTGAAACAAAACCAGTCATTAGACT
CGTTCTGTACCCCGCCCCACCCCCACCCCAGACTGGAATGGAATGGCTTTTCTGAAAAAT
CCCTATGTGTACACACACACACACACACACACCCCTCATTTGTCTTATTAAGTTGGCTTT
TCCTAGCTGCAATACAGATCACTTTTGGTTTCGTTTATGTTTTTTTGT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TGTTTCATGGCTGAAGCCAGGCTAAATTGCATGCCTTCTGACTCCCGATCCATTTCACGG
ATGGATTCTGTTCGTGTCTGTTCCTGGAGACAAGTCTTTGGATGTTCTGGAGAAATATTA
GTATTAGGGGGCCTTTGAGGGTTTTATCCTGTAGAAAAATATCCGAGGATAGGGTGGGGA
GGGGCGGGCAAAGCAGAGGACTTCCGATGATGATAGGCGTCAAGGGCACCTGTCAGGTGG
TCAGCTTCTCTGGGCATCCATTTAGCAGGTGCCCTGGGTGATGTTTGTAATCAGGGAAGT
TTGGTTAACAAAAAAATCTAACCTGCGAGTAGACATGAGACCTTTAGAAAGTCAACCGAG
GCTATCAAAAGAATTAAAATCTTATTTGAATTGAGTAGCCTGTCTCACTGTAGACAGAAA
GGTTTTTTTTTTTCCTTCTTCCGTGAAAATGCTTTTTAATTAGTACAGTTGTTACTATTT
AAGAAAAAATACCCTAAGTACTCTGTTTACTTCTGGTGAAACAAAACCAGTCATTAGACT
CGTTCTGTACCCCGCCCCACCCCCACCCCAGACTGGAATGGAATGGCTTTTCTGAAAAAT
CCCTATGTGTACACACACACACACACACACACCCCTCATTTGTCTTATTAAGTTGGCTTT
TCCTAGCTGCAATACAGATCACTTTTGGTTTCGTTTATGTTTTTTTGT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-202, gnl|bosTau2|chrX (1300285-1300074) |
|
1-202, gnl|canFam2|chrX (94715115-94715586) |
|
1-202, gnl|dasNov1|scaffold_28988 (9503-9003) |
|
1-202, gnl|echTel1|scaffold_311405 (43628-44185) |
|
1-202, gnl|hg17|chrX (118533289-118533750) |
|
1-202, gnl|Hg17|chrX (118533579-118533363) |
|
1-202, gnl|loxAfr1|scaffold_43405 (4028-4535) |
|
1-202, gnl|mm7|chrX (31673611-31674091) |
|
1-202, gnl|Mm7|chrX (31673927-31673722) |
|
1-202, gnl|oryCun1|scaffold_212039 (77335-76841) |
|
1-202, gnl|panTro1|chrX (122559818-122560279) |
|
1-202, gnl|rheMac2|chrX (117888967-117889415) |
|
1-202, gnl|rn3|chrX (7957400-7957007) |
| |
|
261-706, gnl|bosTau2|chrX (1299965-1299536) |
|
261-706, gnl|Hg17|chrX (118533294-118532873) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-202, gnl|bosTau2|chrX (1300285-1300074) |
|
1-202, gnl|canFam2|chrX (94715115-94715586) |
|
1-202, gnl|dasNov1|scaffold_28988 (9503-9003) |
|
1-202, gnl|echTel1|scaffold_311405 (43628-44185) |
|
1-202, gnl|hg17|chrX (118533289-118533750) |
|
1-202, gnl|Hg17|chrX (118533579-118533363) |
|
1-202, gnl|loxAfr1|scaffold_43405 (4028-4535) |
|
1-202, gnl|mm7|chrX (31673611-31674091) |
|
1-202, gnl|Mm7|chrX (31673927-31673722) |
|
1-202, gnl|oryCun1|scaffold_212039 (77335-76841) |
|
1-202, gnl|panTro1|chrX (122559818-122560279) |
|
1-202, gnl|rheMac2|chrX (117888967-117889415) |
|
1-202, gnl|rn3|chrX (7957400-7957007) |
| |
|
261-706, gnl|bosTau2|chrX (1299965-1299536) |
|
261-706, gnl|Hg17|chrX (118533294-118532873) |
|
sin (0.174948) |
|
cki (0.165235) |
|
isp (0.150376) |
|
ssp (0.13552) |
|
eep (0.122564) |
|
sin (0.174948) |
|
cki (0.165235) |
|
isp (0.150376) |
|
ssp (0.13552) |
|
eep (0.122564) |
