Ss1.1-rski0106_d16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTAGAAACTCAAACTGTAATATACCGTAGCATTTTCTTGGTGTTTTTTAAAGTTTCTTTC CACAATACCAGGCACCCCCTGCCTCTAGTTTCTTGGAGCGTTTGTCCCACTAATGAGTCT GCCTCCCTTGTTGGACTCGGTCACATGGGGAACAGTCTTAGAAGCACATATCAACCAAGG AAGAAACTTCCTGGATCTCTCTTGCCCACTTGCCCAGGTATAATAAACACTAAAGGGGGG AAAATTGAAAAGAGCTGCCGCTGGTCAACACAGCAGGGCAGTTCCAACTTAGGTTGGCAT CTTTCTTTTTCTTCCTTTTTTAAAAAAGTCTATTTCTTAAATAATAATAAATGCACATGA TGTGTTAAATAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTAGAAACTCAAACTGTAATATACCGTAGCATTTTCTTGGTGTTTTTTAAAGTTTCTTTC CACAATACCAGGCACCCCCTGCCTCTAGTTTCTTGGAGCGTTTGTCCCACTAATGAGTCT GCCTCCCTTGTTGGACTCGGTCACATGGGGAACAGTCTTAGAAGCACATATCAACCAAGG AAGAAACTTCCTGGATCTCTCTTGCCCACTTGCCCAGGTATAATAAACACTAAAGGGGGG AAAATTGAAAAGAGCTGCCGCTGGTCAACACAGCAGGGCAGTTCCAACTTAGGTTGGCAT CTTTCTTTTTCTTCCTTTTTTAAAAAAGTCTATTTCTTAAATAATAATAAATGCACATGA TGTGTTAAATAT |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 40-198, - strand, RNAz p=0.993353 | |
| 239-351, + strand, RNAz p=0.570932 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 40-198, - strand, RNAz p=0.993353 | |
| 239-351, + strand, RNAz p=0.570932 |
| Predicted microRNA(s): 1 entry(ies) | More info |
| Predicted microRNA(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 88-166, + strand, RNAmicro p=0.998769 |
| Aligned organism(s): 3 entry(ies) | More info |
| Aligned organism(s): 3 entry(ies) | Help | Less info |
| 1-372, gnl|bosTau2|chr24 (35768821-35769198) | |
| 1-372, gnl|Hg17|chr18 (40901598-40901971) | |
| 1-372, gnl|Mm7|chr18 (79036745-79036372) |
| Aligned organism(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-372, gnl|bosTau2|chr24 (35768821-35769198) | |
| 1-372, gnl|Hg17|chr18 (40901598-40901971) | |
| 1-372, gnl|Mm7|chr18 (79036745-79036372) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ski (0.29347) | |
| fat (0.147427) |