Non-Coding RNA Search

Ss1.1-rski0110_o23.5

Sequence:


               
               CGGCTCGAATCTGGCCTTGCTGTGGCTGTGGTGTAGGCCAGCAGCTGTAGCTCCCATTAG
ACCCCTAGCCTGGCAACCTCCATATGCTGCTGGTGCGGCCCTGAGAAGACAAAAGACAAA
AGAAAAATCTTTTCTTAGGGAATCTAGAAAAACGAGCGTCGCATATTATCTTATTGTAAT
GGGGAAGTTGCTTTTTGAGAAACATGGTTCATATTCTACACAGTGATAATCCAGTCGCCT
ATTTTATGACAGATTTAGCTTGGCGGGAGGCAGGGGAAGGATGATGTGGTTAAAGAGAAA
AAGTTCACAGCACCTAAAGTAGAAATTCTGGGAAAGTCTAACCTCATTGTAAACCTTACA
TTGTATCACTGATAAACAGATACTGTACTGTATTGCTCACGAACCACCTTATCATATTTT
GGAAGATGAACTATTCACCAGCCTTTTATAGATGTTGCATAAACTGATTTTACAAGTTTT
CTCAGTGACTTTCTTTTGTACTATGAGAACTTAAAATGCCTAAAGTGTCTAAGACTATAA
AGTTTTTGTGGGGGGTAGAGGCCATGACTACCTCTGAATTCAGTCATTCAGTAAAATCAG
AATATTTCTGATTCTCAATAAAGAATTAATACTCATATAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCTCGAATCTGGCCTTGCTGTGGCTGTGGTGTAGGCCAGCAGCTGTAGCTCCCATTAG
ACCCCTAGCCTGGCAACCTCCATATGCTGCTGGTGCGGCCCTGAGAAGACAAAAGACAAA
AGAAAAATCTTTTCTTAGGGAATCTAGAAAAACGAGCGTCGCATATTATCTTATTGTAAT
GGGGAAGTTGCTTTTTGAGAAACATGGTTCATATTCTACACAGTGATAATCCAGTCGCCT
ATTTTATGACAGATTTAGCTTGGCGGGAGGCAGGGGAAGGATGATGTGGTTAAAGAGAAA
AAGTTCACAGCACCTAAAGTAGAAATTCTGGGAAAGTCTAACCTCATTGTAAACCTTACA
TTGTATCACTGATAAACAGATACTGTACTGTATTGCTCACGAACCACCTTATCATATTTT
GGAAGATGAACTATTCACCAGCCTTTTATAGATGTTGCATAAACTGATTTTACAAGTTTT
CTCAGTGACTTTCTTTTGTACTATGAGAACTTAAAATGCCTAAAGTGTCTAAGACTATAA
AGTTTTTGTGGGGGGTAGAGGCCATGACTACCTCTGAATTCAGTCATTCAGTAAAATCAG
AATATTTCTGATTCTCAATAAAGAATTAATACTCATATAAAAAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               119-644, gnl|bosTau2|chr5 (29448733-29448209)
               

               
               119-644, gnl|Hg17|chr12 (67532080-67531219)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               119-644, gnl|bosTau2|chr5 (29448733-29448209)
               

               
               119-644, gnl|Hg17|chr12 (67532080-67531219)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

Help | Less info


               
               mga (0.64082)
               

               
               mgp (0.461361)
               

               
               pty (0.285429)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               ski (0.146735)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mga (0.64082)
               

               
               mgp (0.461361)
               

               
               pty (0.285429)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               ski (0.146735)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	119-644, gnl\|bosTau2\|chr5 (29448733-29448209)
	119-644, gnl\|Hg17\|chr12 (67532080-67531219)

	mga (0.64082)
	mgp (0.461361)
	pty (0.285429)
	sag (0.182715)
	mgm (0.180343)
	ski (0.146735)
	spc (0.113366)
	eje (0.0988338)