Non-Coding RNA Search

Ss1.1-rski0112_o24.5

Sequence:


               
               TGAGGAGTTATACCACCAGTCCTATGAGTGCGTCTGCGTCATGTTTGCCTCCATTCCGGA
TTTCAAAGAGTTCTATACAGAATCAGACGTGAACAAGGAGGGCCTGGAATGCCTTCGGCT
CCTGAATGAGATCATTGCCGACTTTGACGATCTGCTGTCCAAGCCGAAGTTCAGCGGGGT
TGAAAAGATCAAGACCATCGGCAGCACGTACATGGCAGCGACGGGTCTGAGCGCCGTGCC
CAGCCAGGAGCATGCCCAGGAGCCGGATCGGCAGTACATGCATATTGGCACCATGGTGGA
GTTTGCCTTCGCCCTGGTGGCCAAACTGGACGCCATCAACAAGCACTCCTTCAACGACTT
CAAGCTACGAGTGGGTATCAACCATGGCCCTGTAATAGCTGGTGTCATTGGCGCTCAGAA
GCCGCAGTATGACATCTGGGGCAACACGGTAAACGTGGCCAGTAGGATGGACAGCACCGG
AGTCCTGGACAAAATACAGGTTACAGAGGAAACGAGCCTCATTCTGCAGACCCTGGGGTA
CACGTGCACGTGTCGAGGCATCATCAACGTGAAGGGAAAGGGGGACCTGAAGACGTACTT
TGTGAACGCCGAGATGTCCAGGTCCCTTTCCCAAAGCAACCTGGCATCCTGAAGCGGCGC
CTCATTTCGGCAAGAAGACTGTCTCTTCAGGAGGATACAATGCACTTTCTGACTGCACCG
TTTGTCCCTCGTTTGTGATGTGCGTGCTCTGTTCTGTCCTCTGGAGCCTTTGCAGGCTCG
TTCCTGTGACCCGGTGGCATCCCGTTTGGTGTCCGACGTGTGCCAAGACCGCCCTGCCAC
TTGCACTGTGCTTACGCCTCGGCAAAAGGAAAAGGAGCGTGTGATAGAGCAGAAAAGCAG
AGACCTGACAGAGAGGAGAGAGGTGAAACAAACAAAAATTCTCAAGGCAATAAAACTAGG
GGGTGTATATTATCTTCCAGTGCATGTTCTTTTCTGGAAAATATGGTAGCTCGCCAACCG
CATCCGCTAGTCTGATACTCAAACACACAGTATTTGTGAAGAAGTTGACTCTGTCGCCCG
CCCCCATGGAATCTGACTGTCCCCACCCCCGTGTCTCATTGCAGCAACTGTCCACGACCC
CACTGGGATCCGTGGATCGGTCGCCTGGCTCTGTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGGAGTTATACCACCAGTCCTATGAGTGCGTCTGCGTCATGTTTGCCTCCATTCCGGA
TTTCAAAGAGTTCTATACAGAATCAGACGTGAACAAGGAGGGCCTGGAATGCCTTCGGCT
CCTGAATGAGATCATTGCCGACTTTGACGATCTGCTGTCCAAGCCGAAGTTCAGCGGGGT
TGAAAAGATCAAGACCATCGGCAGCACGTACATGGCAGCGACGGGTCTGAGCGCCGTGCC
CAGCCAGGAGCATGCCCAGGAGCCGGATCGGCAGTACATGCATATTGGCACCATGGTGGA
GTTTGCCTTCGCCCTGGTGGCCAAACTGGACGCCATCAACAAGCACTCCTTCAACGACTT
CAAGCTACGAGTGGGTATCAACCATGGCCCTGTAATAGCTGGTGTCATTGGCGCTCAGAA
GCCGCAGTATGACATCTGGGGCAACACGGTAAACGTGGCCAGTAGGATGGACAGCACCGG
AGTCCTGGACAAAATACAGGTTACAGAGGAAACGAGCCTCATTCTGCAGACCCTGGGGTA
CACGTGCACGTGTCGAGGCATCATCAACGTGAAGGGAAAGGGGGACCTGAAGACGTACTT
TGTGAACGCCGAGATGTCCAGGTCCCTTTCCCAAAGCAACCTGGCATCCTGAAGCGGCGC
CTCATTTCGGCAAGAAGACTGTCTCTTCAGGAGGATACAATGCACTTTCTGACTGCACCG
TTTGTCCCTCGTTTGTGATGTGCGTGCTCTGTTCTGTCCTCTGGAGCCTTTGCAGGCTCG
TTCCTGTGACCCGGTGGCATCCCGTTTGGTGTCCGACGTGTGCCAAGACCGCCCTGCCAC
TTGCACTGTGCTTACGCCTCGGCAAAAGGAAAAGGAGCGTGTGATAGAGCAGAAAAGCAG
AGACCTGACAGAGAGGAGAGAGGTGAAACAAACAAAAATTCTCAAGGCAATAAAACTAGG
GGGTGTATATTATCTTCCAGTGCATGTTCTTTTCTGGAAAATATGGTAGCTCGCCAACCG
CATCCGCTAGTCTGATACTCAAACACACAGTATTTGTGAAGAAGTTGACTCTGTCGCCCG
CCCCCATGGAATCTGACTGTCCCCACCCCCGTGTCTCATTGCAGCAACTGTCCACGACCC
CACTGGGATCCGTGGATCGGTCGCCTGGCTCTGTTG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|2194107|pdb|1AB8|B

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|2194107|pdb|1AB8|B

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-163, gnl|bosTau2|chr10 (12181733-12181895)
               

               
               3-163, gnl|Hg17|chr14 (23858936-23858774)
               

               
               3-163, gnl|Mm7|chr14 (50637873-50637723)
               


               
               373-508, gnl|bosTau2|chr10 (12182816-12182950)
               

               
               373-508, gnl|Hg17|chr14 (23857825-23857691)
               

               
               373-508, gnl|Mm7|chr14 (50636851-50636719)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-163, gnl|bosTau2|chr10 (12181733-12181895)
               

               
               3-163, gnl|Hg17|chr14 (23858936-23858774)
               

               
               3-163, gnl|Mm7|chr14 (50637873-50637723)
               


               
               373-508, gnl|bosTau2|chr10 (12182816-12182950)
               

               
               373-508, gnl|Hg17|chr14 (23857825-23857691)
               

               
               373-508, gnl|Mm7|chr14 (50636851-50636719)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               nms (0.213858)
               

               
               cag (0.151194)
               

               
               ski (0.146735)
               

               
               ssp (0.13552)
               

               
               ldo (0.0970026)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               cag (0.151194)
               

               
               ski (0.146735)
               

               
               ssp (0.13552)
               

               
               ldo (0.0970026)

	3-163, gnl\|bosTau2\|chr10 (12181733-12181895)
	3-163, gnl\|Hg17\|chr14 (23858936-23858774)
	3-163, gnl\|Mm7\|chr14 (50637873-50637723)

	373-508, gnl\|bosTau2\|chr10 (12182816-12182950)
	373-508, gnl\|Hg17\|chr14 (23857825-23857691)
	373-508, gnl\|Mm7\|chr14 (50636851-50636719)

	nms (0.213858)
	cag (0.151194)
	ski (0.146735)
	ssp (0.13552)
	ldo (0.0970026)